View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5489_low_30 (Length: 248)
Name: NF5489_low_30
Description: NF5489
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5489_low_30 |
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Alignment Details
Target: chr2 (Bit Score: 221; Significance: 1e-122; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 221; E-Value: 1e-122
Query Start/End: Original strand, 1 - 246
Target Start/End: Original strand, 40953894 - 40954139
Alignment:
| Q |
1 |
ccaatctccgtagactacgccttcttatcacatcatcagctgaatttcactgaaattttttcaatatcaagtatattgtgattatttgatgtaacataac |
100 |
Q |
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| T |
40953894 |
ccaatctccgtagactacgccttcttatcacatcatcagctgaatttcactgaaattttttcaatatcaagtatattgtgattatttgatgtaacataac |
40953993 |
T |
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| Q |
101 |
ataaaatgttggtccaactggtccaatgtattaaaccnnnnnnnctgtaacaatattaattcctatatatacagcattgtggaaactacaggaaggtagt |
200 |
Q |
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| T |
40953994 |
ataaaatgttggtccaactggtccaatgtattaaaccaaaaaaactgtaacaatattaattcctatatatacagcattgtggaaactacaggaaggtagt |
40954093 |
T |
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| Q |
201 |
tactagttacaatggagcgtttgaagaaatcaccatcaacttcatc |
246 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
40954094 |
tactagttacaatggagcgtttgaagaaatcaccatcatcttcatc |
40954139 |
T |
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