View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5489_low_31 (Length: 248)

Name: NF5489_low_31
Description: NF5489
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5489_low_31
NF5489_low_31
[»] chr4 (13 HSPs)
chr4 (72-248)||(40424502-40424678)
chr4 (102-183)||(28236384-28236465)
chr4 (120-186)||(56375510-56375576)
chr4 (99-175)||(39708632-39708708)
chr4 (99-183)||(55007945-55008029)
chr4 (99-177)||(46226373-46226451)
chr4 (103-183)||(35690474-35690554)
chr4 (101-177)||(45184138-45184214)
chr4 (99-173)||(22873608-22873682)
chr4 (101-183)||(51421931-51422013)
chr4 (99-183)||(25575023-25575107)
chr4 (99-183)||(37798050-37798134)
chr4 (99-183)||(51438644-51438728)
[»] chr8 (17 HSPs)
chr8 (99-183)||(35323972-35324056)
chr8 (99-183)||(42584558-42584641)
chr8 (99-182)||(4955390-4955473)
chr8 (120-183)||(32569709-32569772)
chr8 (99-188)||(15215406-15215495)
chr8 (99-183)||(490534-490618)
chr8 (108-176)||(18741840-18741908)
chr8 (108-176)||(18746804-18746872)
chr8 (99-183)||(30198265-30198349)
chr8 (99-183)||(33076323-33076407)
chr8 (99-182)||(29520848-29520931)
chr8 (103-186)||(30783038-30783121)
chr8 (99-182)||(35914601-35914684)
chr8 (126-182)||(26363712-26363768)
chr8 (105-169)||(34692605-34692669)
chr8 (105-141)||(37768484-37768520)
chr8 (129-177)||(39702183-39702231)
[»] chr1 (11 HSPs)
chr1 (99-183)||(34444555-34444639)
chr1 (99-182)||(25715326-25715409)
chr1 (99-183)||(8796408-8796492)
chr1 (99-183)||(28090693-28090777)
chr1 (99-177)||(37462881-37462959)
chr1 (99-154)||(39896762-39896817)
chr1 (120-182)||(28533687-28533749)
chr1 (99-183)||(6084174-6084258)
chr1 (99-183)||(25979230-25979314)
chr1 (99-183)||(38807670-38807754)
chr1 (99-183)||(51812708-51812792)
[»] chr7 (14 HSPs)
chr7 (99-183)||(36101776-36101860)
chr7 (119-183)||(5418293-5418357)
chr7 (99-183)||(25891087-25891171)
chr7 (125-183)||(17907723-17907781)
chr7 (99-183)||(25731473-25731557)
chr7 (99-182)||(40979928-40980011)
chr7 (99-177)||(31681025-31681103)
chr7 (104-177)||(9796288-9796361)
chr7 (99-183)||(28355364-28355449)
chr7 (99-183)||(2885721-2885805)
chr7 (99-183)||(7273299-7273383)
chr7 (99-183)||(9210703-9210787)
chr7 (99-143)||(26332912-26332956)
chr7 (99-183)||(28208327-28208411)
[»] chr6 (8 HSPs)
chr6 (120-182)||(1615223-1615285)
chr6 (99-183)||(34504-34588)
chr6 (99-177)||(30031455-30031533)
chr6 (99-164)||(7513008-7513073)
chr6 (99-183)||(12890774-12890858)
chr6 (99-182)||(5096033-5096116)
chr6 (99-177)||(608360-608438)
chr6 (99-183)||(3206458-3206542)
[»] chr5 (7 HSPs)
chr5 (99-183)||(11675729-11675813)
chr5 (99-185)||(18855806-18855892)
chr5 (103-186)||(7678681-7678763)
chr5 (99-182)||(43557833-43557916)
chr5 (118-183)||(7359260-7359325)
chr5 (100-176)||(14667971-14668047)
chr5 (99-183)||(20367092-20367176)
[»] chr2 (9 HSPs)
chr2 (99-183)||(12520061-12520145)
chr2 (100-182)||(10516749-10516831)
chr2 (99-183)||(9531599-9531683)
chr2 (99-183)||(12734899-12734983)
chr2 (99-186)||(13443904-13443991)
chr2 (99-182)||(13474214-13474297)
chr2 (99-185)||(9394627-9394713)
chr2 (99-183)||(9496065-9496149)
chr2 (126-182)||(11412936-11412992)
[»] chr3 (10 HSPs)
chr3 (99-182)||(40106620-40106703)
chr3 (99-185)||(54128578-54128664)
chr3 (102-182)||(38850323-38850403)
chr3 (99-183)||(39208807-39208891)
chr3 (99-183)||(48508434-48508518)
chr3 (99-182)||(14415260-14415342)
chr3 (99-177)||(23534576-23534653)
chr3 (104-182)||(30797822-30797900)
chr3 (118-183)||(45374476-45374541)
chr3 (123-183)||(43694770-43694830)
[»] scaffold0491 (1 HSPs)
scaffold0491 (108-176)||(3645-3713)


Alignment Details
Target: chr4 (Bit Score: 116; Significance: 4e-59; HSPs: 13)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 116; E-Value: 4e-59
Query Start/End: Original strand, 72 - 248
Target Start/End: Original strand, 40424502 - 40424678
Alignment:
Q  72 gttttaattcaatactgagttggcaatatatggtttataataaaatattatgacgtaatttaatctatgtagtcgacctcatttagtaggataagacttg 171  Q
    |||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40424502 gttttaattcaatagtgaattggcaatatatggtttataataaaatattatgacgtaatttaatctatgtagtcgacctcatttagtaggataagacttg 40424601  T
Q  172 ---gttgtttttgttatagttgacaatatataaagnnnnnnnnnnnatcaagtagcttatggactataaattcacctctt 248  Q
       |||||| |||||||||||||||||||||||||           ||||||||||||||||||||||||||||||||||    
T  40424602 gttgttgttgttgttatagttgacaatatataaag---ttttttttatcaagtagcttatggactataaattcacctctt 40424678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 102 - 183
Target Start/End: Original strand, 28236384 - 28236465
Alignment:
Q  102 tggtttataataaaatattatgacgtaatttaatctatgtagtcgacctcatttagtaggataagacttggttgtttttgtt 183  Q
    |||||||| ||| |||||||||  ||||||| |||||||||| ||||| || ||||| |||||||||||||||||| |||||    
T  28236384 tggtttatgatagaatattatggtgtaatttgatctatgtagccgaccccacttagtgggataagacttggttgttgttgtt 28236465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 120 - 186
Target Start/End: Original strand, 56375510 - 56375576
Alignment:
Q  120 tatgacgtaatttaatctatgtagtcgacctcatttagtaggataagacttggttgtttttgttata 186  Q
    |||||||| |||| ||| |||||| |||||||| ||||| |||||||||||||||||| ||||||||    
T  56375510 tatgacgtcatttgatccatgtagccgacctcacttagtgggataagacttggttgttgttgttata 56375576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 99 - 175
Target Start/End: Original strand, 39708632 - 39708708
Alignment:
Q  99 atatggtttataataaaatattatgacgtaatttaatctatgtagtcgacctcatttagtaggataagacttggttg 175  Q
    ||||||||||| ||| || | |||| |||||||| ||| |||||||||||| || ||||| ||||||||||||||||    
T  39708632 atatggtttatgatagaacactatgtcgtaatttgatccatgtagtcgaccccacttagtgggataagacttggttg 39708708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 99 - 183
Target Start/End: Original strand, 55007945 - 55008029
Alignment:
Q  99 atatggtttataataaaatattatgacgtaatttaatctatgtagtcgacctcatttagtaggataagacttggttgtttttgtt 183  Q
    ||||||||||| ||| |  ||||||||||||||| ||| |||||| ||||| || ||||| ||||||| |||||||||| |||||    
T  55007945 atatggtttatgatagatcattatgacgtaatttgatccatgtagccgaccccacttagtgggataaggcttggttgttgttgtt 55008029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 99 - 177
Target Start/End: Original strand, 46226373 - 46226451
Alignment:
Q  99 atatggtttataataaaatattatgacgtaatttaatctatgtagtcgacctcatttagtaggataagacttggttgtt 177  Q
    ||||||||||| |||||||| ||||||| ||||||||  ||||||| ||||||| ||| | |||||| ||||| |||||    
T  46226373 atatggtttatgataaaatactatgacgaaatttaattcatgtagttgacctcacttattgggataaaacttgattgtt 46226451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 103 - 183
Target Start/End: Original strand, 35690474 - 35690554
Alignment:
Q  103 ggtttataataaaatattatgacgtaatttaatctatgtagtcgacctcatttagtaggataagacttggttgtttttgtt 183  Q
    ||||||| ||| || |||||| |||||||| ||| |||||| ||||| || ||||| ||||||||||||||| || |||||    
T  35690474 ggtttatgatagaacattatggcgtaatttgatccatgtagccgaccccacttagtgggataagacttggtttttgttgtt 35690554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 101 - 177
Target Start/End: Complemental strand, 45184214 - 45184138
Alignment:
Q  101 atggtttataataaaatattatgacgtaatttaatctatgtagtcgacctcatttagtaggataagacttggttgtt 177  Q
    |||||||||||||||| ||||||||||||||  ||  |||||| ||||| || ||||| ||||||| ||| ||||||    
T  45184214 atggtttataataaaacattatgacgtaattcgattcatgtagccgaccccacttagtgggataaggcttagttgtt 45184138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 99 - 173
Target Start/End: Complemental strand, 22873682 - 22873608
Alignment:
Q  99 atatggtttataataaaatattatgacgtaatttaatctatgtagtcgacctcatttagtaggataagacttggt 173  Q
    |||||| |||| ||| || ||||| ||||||||||||| |||||| | ||| |||||||| ||||||| ||||||    
T  22873682 atatgggttatgatagaacattataacgtaatttaatccatgtagccaaccccatttagtgggataaggcttggt 22873608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 101 - 183
Target Start/End: Original strand, 51421931 - 51422013
Alignment:
Q  101 atggtttataataaaatattatgacgtaatttaatctatgtagtcgacctcatttagtaggataagacttggttgtttttgtt 183  Q
    ||||||||| ||| || ||||||||||||||| ||| |||||| | | |||| ||||| ||||||  |||||||||| |||||    
T  51421931 atggtttatgatagaacattatgacgtaatttgatccatgtagccaatctcacttagtgggataaagcttggttgttgttgtt 51422013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 99 - 183
Target Start/End: Original strand, 25575023 - 25575107
Alignment:
Q  99 atatggtttataataaaatattatgacgtaatttaatctatgtagtcgacctcatttagtaggataagacttggttgtttttgtt 183  Q
    ||||||||||| ||| || ||| ||  ||||||| ||| ||||||  |||| |||||||| ||||||| |||||||||| |||||    
T  25575023 atatggtttatgatagaacattgtggtgtaatttgatccatgtagcagaccccatttagtgggataaggcttggttgttgttgtt 25575107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 99 - 183
Target Start/End: Original strand, 37798050 - 37798134
Alignment:
Q  99 atatggtttataataaaatattatgacgtaatttaatctatgtagtcgacctcatttagtaggataagacttggttgtttttgtt 183  Q
    ||||||||||| ||| || | |||||||| |||| ||| |||||| ||||  |||||||| ||||||| ||||||| || |||||    
T  37798050 atatggtttatgatagaacaatatgacgtcatttgatcaatgtagccgactccatttagtgggataaggcttggttattgttgtt 37798134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 99 - 183
Target Start/End: Original strand, 51438644 - 51438728
Alignment:
Q  99 atatggtttataataaaatattatgacgtaatttaatctatgtagtcgacctcatttagtaggataagacttggttgtttttgtt 183  Q
    ||||||||||||||| || |||||| |||||||| ||| ||||||  ||||  | || || ||||||| |||||||||| |||||    
T  51438644 atatggtttataatataacattatggcgtaatttgatccatgtagctgacccaactttgtgggataaggcttggttgttgttgtt 51438728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 45; Significance: 9e-17; HSPs: 17)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 99 - 183
Target Start/End: Original strand, 35323972 - 35324056
Alignment:
Q  99 atatggtttataataaaatattatgacgtaatttaatctatgtagtcgacctcatttagtaggataagacttggttgtttttgtt 183  Q
    ||||||| |||||||||||||||||||||||||| ||| | |||| ||||| || ||||| ||||||| |||||||||| |||||    
T  35323972 atatggtatataataaaatattatgacgtaatttgatccacgtagccgaccccacttagtgggataaggcttggttgttgttgtt 35324056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 99 - 183
Target Start/End: Original strand, 42584558 - 42584641
Alignment:
Q  99 atatggtttataataaaatattatgacgtaatttaatctatgtagtcgacctcatttagtaggataagacttggttgtttttgtt 183  Q
    ||||||||||| ||| || ||||||||||||||| |||| ||||| ||||| || ||||| |||||||||||| ||||| |||||    
T  42584558 atatggtttatgatagaacattatgacgtaatttgatct-tgtagccgaccccacttagtgggataagacttgattgttgttgtt 42584641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 99 - 182
Target Start/End: Original strand, 4955390 - 4955473
Alignment:
Q  99 atatggtttataataaaatattatgacgtaatttaatctatgtagtcgacctcatttagtaggataagacttggttgtttttgt 182  Q
    ||||| |||||||||||| |||| |||||||||| || ||||||||||| |||| |||||  ||||||  ||||||||| ||||    
T  4955390 atatgatttataataaaacattacgacgtaatttgatttatgtagtcgatctcacttagtgagataaggtttggttgttgttgt 4955473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 120 - 183
Target Start/End: Complemental strand, 32569772 - 32569709
Alignment:
Q  120 tatgacgtaatttaatctatgtagtcgacctcatttagtaggataagacttggttgtttttgtt 183  Q
    |||||||| |||| || ||||||| ||||| |||||||| |||||||||||||||||| |||||    
T  32569772 tatgacgtcatttgatttatgtagccgaccccatttagtgggataagacttggttgttgttgtt 32569709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 99 - 188
Target Start/End: Complemental strand, 15215495 - 15215406
Alignment:
Q  99 atatggtttataataaaatattatgacgtaatttaatctatgtagtcgacctcatttagtaggataagacttggttgtttttgttatagt 188  Q
    ||||||||| ||||| || | |||||||| || | ||| |||||| ||||| || ||||||||||||| |||||||||| ||||| ||||    
T  15215495 atatggtttttaatagaacactatgacgtcatatgatccatgtagccgaccccacttagtaggataaggcttggttgttgttgttgtagt 15215406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 99 - 183
Target Start/End: Original strand, 490534 - 490618
Alignment:
Q  99 atatggtttataataaaatattatgacgtaatttaatctatgtagtcgacctcatttagtaggataagacttggttgtttttgtt 183  Q
    ||||||||||| ||| || |||||| |||||||| ||| |||||| ||||| || ||||| ||||||| |||| ||||| |||||    
T  490534 atatggtttatgatagaacattatggcgtaatttgatccatgtagccgaccccacttagtgggataaggcttgtttgttgttgtt 490618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 108 - 176
Target Start/End: Original strand, 18741840 - 18741908
Alignment:
Q  108 ataataaaatattatgacgtaatttaatctatgtagtcgacctcatttagtaggataagacttggttgt 176  Q
    |||||| || ||||||||||||||| ||| | |||| ||||| || ||||| |||||||||||||||||    
T  18741840 ataatagaacattatgacgtaatttgatccaagtagccgaccccacttagtgggataagacttggttgt 18741908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 108 - 176
Target Start/End: Original strand, 18746804 - 18746872
Alignment:
Q  108 ataataaaatattatgacgtaatttaatctatgtagtcgacctcatttagtaggataagacttggttgt 176  Q
    |||||| || ||||||||||||||| ||| | |||| ||||| || ||||| |||||||||||||||||    
T  18746804 ataatagaacattatgacgtaatttgatccaagtagccgaccccacttagtgggataagacttggttgt 18746872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 99 - 183
Target Start/End: Complemental strand, 30198349 - 30198265
Alignment:
Q  99 atatggtttataataaaatattatgacgtaatttaatctatgtagtcgacctcatttagtaggataagacttggttgtttttgtt 183  Q
    ||||||||||| ||| |||||||||  ||| ||| |||||||| | ||||| || ||||| ||||||| |||||||||| |||||    
T  30198349 atatggtttatgatagaatattatggtgtagtttgatctatgttgccgaccccacttagtgggataaggcttggttgttgttgtt 30198265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 99 - 183
Target Start/End: Original strand, 33076323 - 33076407
Alignment:
Q  99 atatggtttataataaaatattatgacgtaatttaatctatgtagtcgacctcatttagtaggataagacttggttgtttttgtt 183  Q
    ||||||||||||||| |||||||||| ||||||| ||| |||||||   || || ||||| |||||||| ||| ||||| |||||    
T  33076323 atatggtttataatagaatattatgatgtaatttgatccatgtagttatccccacttagtgggataagatttgattgttgttgtt 33076407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 99 - 182
Target Start/End: Original strand, 29520848 - 29520931
Alignment:
Q  99 atatggtttataataaaatattatgacgtaatttaatctatgtagtcgacctcatttagtaggataagacttggttgtttttgt 182  Q
    ||||||||||| ||| || |||||| |||||||| ||| |||||| | ||| |||||||| ||||||  |||||||||| ||||    
T  29520848 atatggtttatgatagaacattatggcgtaatttgatccatgtagcccaccccatttagtgggataatgcttggttgttgttgt 29520931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 103 - 186
Target Start/End: Complemental strand, 30783121 - 30783038
Alignment:
Q  103 ggtttataataaaatattatgacgtaatttaatctatgtagtcgacctcatttagtaggataagacttggttgtttttgttata 186  Q
    |||||||||||||| ||||||| ||| ||| ||| |||||| ||||| ||| |||| |||||| |||||  |||| ||||||||    
T  30783121 ggtttataataaaacattatgaggtagtttgatccatgtagccgaccccatctagtgggataaaacttgactgttgttgttata 30783038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 99 - 182
Target Start/End: Complemental strand, 35914684 - 35914601
Alignment:
Q  99 atatggtttataataaaatattatgacgtaatttaatctatgtagtcgacctcatttagtaggataagacttggttgtttttgt 182  Q
    ||||||||||| ||| || |||||| |||||||| ||| ||||||  |||| || |||||  ||||||||||||||||| ||||    
T  35914684 atatggtttatgatagaacattatggcgtaatttgatccatgtagctgaccccacttagtgagataagacttggttgttgttgt 35914601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 126 - 182
Target Start/End: Original strand, 26363712 - 26363768
Alignment:
Q  126 gtaatttaatctatgtagtcgacctcatttagtaggataagacttggttgtttttgt 182  Q
    ||||||| ||| |||||||||||| || | ||| |||||||||||||||||| ||||    
T  26363712 gtaatttgatccatgtagtcgaccccactcagtgggataagacttggttgttgttgt 26363768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 105 - 169
Target Start/End: Original strand, 34692605 - 34692669
Alignment:
Q  105 tttataataaaatattatgacgtaatttaatctatgtagtcgacctcatttagtaggataagact 169  Q
    ||||| ||| ||||||||| |||||||| ||| | |||| |||| |||||||||||| |||||||    
T  34692605 tttatgatagaatattatgtcgtaatttgatcaacgtagccgacttcatttagtagggtaagact 34692669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 105 - 141
Target Start/End: Original strand, 37768484 - 37768520
Alignment:
Q  105 tttataataaaatattatgacgtaatttaatctatgt 141  Q
    ||||||||| |||||||||||||||||| ||||||||    
T  37768484 tttataatagaatattatgacgtaatttgatctatgt 37768520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 129 - 177
Target Start/End: Original strand, 39702183 - 39702231
Alignment:
Q  129 atttaatctatgtagtcgacctcatttagtaggataagacttggttgtt 177  Q
    |||| |||||||||| ||||| |||||||| |||||| |||||||||||    
T  39702183 atttgatctatgtagccgaccacatttagtgggataaaacttggttgtt 39702231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 45; Significance: 9e-17; HSPs: 11)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 99 - 183
Target Start/End: Original strand, 34444555 - 34444639
Alignment:
Q  99 atatggtttataataaaatattatgacgtaatttaatctatgtagtcgacctcatttagtaggataagacttggttgtttttgtt 183  Q
    |||||||||||||||||| ||||||  ||||||| |||||||||| ||||| || ||||| ||||||| |||||||||| |||||    
T  34444555 atatggtttataataaaacattatggtgtaatttgatctatgtagccgaccccacttagtgggataaggcttggttgttgttgtt 34444639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 99 - 182
Target Start/End: Complemental strand, 25715409 - 25715326
Alignment:
Q  99 atatggtttataataaaatattatgacgtaatttaatctatgtagtcgacctcatttagtaggataagacttggttgtttttgt 182  Q
    ||||||||||| ||| ||||||||| |||||||| ||| |||||| |||||||| ||||| ||||||| |||||||||| ||||    
T  25715409 atatggtttatgatagaatattatggcgtaatttgatccatgtagccgacctcacttagtgggataaggcttggttgttgttgt 25715326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 99 - 183
Target Start/End: Original strand, 8796408 - 8796492
Alignment:
Q  99 atatggtttataataaaatattatgacgtaatttaatctatgtagtcgacctcatttagtaggataagacttggttgtttttgtt 183  Q
    ||||||||||| ||| || |||||| |||||||||||| |||||| ||||| || ||||| ||||||| |||||||||| |||||    
T  8796408 atatggtttatgatagaacattatggcgtaatttaatccatgtagccgaccccacttagtgggataaggcttggttgttgttgtt 8796492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 99 - 183
Target Start/End: Complemental strand, 28090777 - 28090693
Alignment:
Q  99 atatggtttataataaaatattatgacgtaatttaatctatgtagtcgacctcatttagtaggataagacttggttgtttttgtt 183  Q
    ||||||||||| ||| || |||||| |||||||| ||| |||||| ||||| || ||||| |||||||||||||||||| |||||    
T  28090777 atatggtttatgatagaacattatggcgtaatttgatccatgtagccgaccccacttagtgggataagacttggttgttgttgtt 28090693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 99 - 177
Target Start/End: Complemental strand, 37462959 - 37462881
Alignment:
Q  99 atatggtttataataaaatattatgacgtaatttaatctatgtagtcgacctcatttagtaggataagacttggttgtt 177  Q
    ||||||||||| ||| || |||||| |||||||| ||| |||||| ||||| || ||||| ||||||| ||||||||||    
T  37462959 atatggtttatcatagaacattatggcgtaatttgatccatgtagccgaccccacttagtgggataaggcttggttgtt 37462881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 99 - 154
Target Start/End: Original strand, 39896762 - 39896817
Alignment:
Q  99 atatggtttataataaaatattatgacgtaatttaatctatgtagtcgacctcatt 154  Q
    ||||||||||| ||| || |||||| |||||||||||  |||||||||||||||||    
T  39896762 atatggtttatgatataacattatggcgtaatttaattcatgtagtcgacctcatt 39896817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 120 - 182
Target Start/End: Original strand, 28533687 - 28533749
Alignment:
Q  120 tatgacgtaatttaatctatgtagtcgacctcatttagtaggataagacttggttgtttttgt 182  Q
    |||||||| |||| ||| |||||| ||||| || ||||| |||||||||||||||||| ||||    
T  28533687 tatgacgtcatttgatccatgtagccgaccccacttagtgggataagacttggttgttgttgt 28533749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 99 - 183
Target Start/End: Original strand, 6084174 - 6084258
Alignment:
Q  99 atatggtttataataaaatattatgacgtaatttaatctatgtagtcgacctcatttagtaggataagacttggttgtttttgtt 183  Q
    ||||||||||| ||| || | |||| |||||||| ||| ||||| | || |||| ||||| ||||||| |||||||||| |||||    
T  6084174 atatggtttatgatagaacaatatggcgtaatttgatccatgtatttgatctcacttagtgggataaggcttggttgttattgtt 6084258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 99 - 183
Target Start/End: Complemental strand, 25979314 - 25979230
Alignment:
Q  99 atatggtttataataaaatattatgacgtaatttaatctatgtagtcgacctcatttagtaggataagacttggttgtttttgtt 183  Q
    ||||||||||| ||| || | |||| ||| |||| ||| |||||| ||||| || ||||| ||||||| |||||||||| |||||    
T  25979314 atatggtttatgatagaacactatggcgtcatttgatccatgtagccgaccccacttagtgggataaggcttggttgttgttgtt 25979230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 99 - 183
Target Start/End: Complemental strand, 38807754 - 38807670
Alignment:
Q  99 atatggtttataataaaatattatgacgtaatttaatctatgtagtcgacctcatttagtaggataagacttggttgtttttgtt 183  Q
    ||||||||||| ||| || | |||| ||||||||  || |||||| ||||| || ||||| ||||||| |||||||||| |||||    
T  38807754 atatggtttatgatagaacactatggcgtaatttgttccatgtagccgaccccacttagtgggataaggcttggttgttgttgtt 38807670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 99 - 183
Target Start/End: Original strand, 51812708 - 51812792
Alignment:
Q  99 atatggtttataataaaatattatgacgtaatttaatctatgtagtcgacctcatttagtaggataagacttggttgtttttgtt 183  Q
    ||||||||||| ||| ||||||||| ||||||||||| ||| ||  ||||| || | ||| ||||||| ||||||| || |||||    
T  51812708 atatggtttatgatagaatattatgccgtaatttaatatatatatacgaccccactaagtgggataaggcttggtttttgttgtt 51812792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 14)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 99 - 183
Target Start/End: Complemental strand, 36101860 - 36101776
Alignment:
Q  99 atatggtttataataaaatattatgacgtaatttaatctatgtagtcgacctcatttagtaggataagacttggttgtttttgtt 183  Q
    ||||||||||| ||| || ||||||||||||||| ||| ||||||| |||| || ||||| ||||||| |||||||||| |||||    
T  36101860 atatggtttatgatagaacattatgacgtaatttgatccatgtagttgaccccacttagtgggataaggcttggttgttgttgtt 36101776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 119 - 183
Target Start/End: Original strand, 5418293 - 5418357
Alignment:
Q  119 ttatgacgtaatttaatctatgtagtcgacctcatttagtaggataagacttggttgtttttgtt 183  Q
    ||||| |||||||| ||| |||||||||||| |||||||| ||||||| |||||||||| |||||    
T  5418293 ttatggcgtaatttgatccatgtagtcgaccccatttagtgggataaggcttggttgttgttgtt 5418357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 99 - 183
Target Start/End: Original strand, 25891087 - 25891171
Alignment:
Q  99 atatggtttataataaaatattatgacgtaatttaatctatgtagtcgacctcatttagtaggataagacttggttgtttttgtt 183  Q
    ||||||||||||||| || ||||||  ||||||| ||| |||||| ||||| || |||||| |||||| |||||||||| |||||    
T  25891087 atatggtttataatagaacattatggtgtaatttgatccatgtagccgaccccacttagtacgataaggcttggttgttgttgtt 25891171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 125 - 183
Target Start/End: Complemental strand, 17907781 - 17907723
Alignment:
Q  125 cgtaatttaatctatgtagtcgacctcatttagtaggataagacttggttgtttttgtt 183  Q
    |||||||| ||| |||||| ||||| ||||||| ||||||||||||||||||| |||||    
T  17907781 cgtaatttgatccatgtagccgaccccatttagcaggataagacttggttgttgttgtt 17907723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 99 - 183
Target Start/End: Complemental strand, 25731557 - 25731473
Alignment:
Q  99 atatggtttataataaaatattatgacgtaatttaatctatgtagtcgacctcatttagtaggataagacttggttgtttttgtt 183  Q
    |||||||||  |||| || |||||| |||||||| ||| ||||||  |||||| |||| | |||||||||||||||||| |||||    
T  25731557 atatggtttcgaatagaacattatggcgtaatttgatcaatgtagcagacctcgtttaatgggataagacttggttgttgttgtt 25731473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 99 - 182
Target Start/End: Complemental strand, 40980011 - 40979928
Alignment:
Q  99 atatggtttataataaaatattatgacgtaatttaatctatgtagtcgacctcatttagtaggataagacttggttgtttttgt 182  Q
    ||||||||||| ||| || | |||| |||||||| ||| |||||| ||||| || ||||| ||||||| |||||||||| ||||    
T  40980011 atatggtttatgatagaacactatggcgtaatttgatccatgtagccgaccccacttagtgggataaggcttggttgttgttgt 40979928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 99 - 177
Target Start/End: Complemental strand, 31681103 - 31681025
Alignment:
Q  99 atatggtttataataaaatattatgacgtaatttaatctatgtagtcgacctcatttagtaggataagacttggttgtt 177  Q
    |||||| |||| ||| |||| ||||||||||||| ||| |||||| ||||| || ||||| ||| ||| ||||||||||    
T  31681103 atatggcttatgatagaatactatgacgtaatttgatccatgtagccgaccccacttagtgggaaaaggcttggttgtt 31681025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 104 - 177
Target Start/End: Original strand, 9796288 - 9796361
Alignment:
Q  104 gtttataataaaatattatgacgtaatttaatctatgtagtcgacctcatttagtaggataagacttggttgtt 177  Q
    ||||||||||||| ||||||||||||||  ||  |||||| |||||||| ||| | |||||||| || ||||||    
T  9796288 gtttataataaaacattatgacgtaattcgattcatgtagccgacctcacttaatgggataagatttagttgtt 9796361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 99 - 183
Target Start/End: Original strand, 28355364 - 28355449
Alignment:
Q  99 atatggtttataataaaatattatgacgtaatttaatctatgtagtc-gacctcatttagtaggataagacttggttgtttttgtt 183  Q
    ||||||||||| |||||| |||||| || ||||| ||| | |||||| |||| || ||||| ||||||| |||||||||| |||||    
T  28355364 atatggtttatgataaaacattatggcggaatttgatccacgtagtctgaccccacttagtgggataaggcttggttgttgttgtt 28355449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 99 - 183
Target Start/End: Complemental strand, 2885805 - 2885721
Alignment:
Q  99 atatggtttataataaaatattatgacgtaatttaatctatgtagtcgacctcatttagtaggataagacttggttgtttttgtt 183  Q
    ||||||||||| ||| || | ||||  ||||||| ||| |||||| ||||| || ||||| ||||||| |||||||||| |||||    
T  2885805 atatggtttatgatagaacactatggtgtaatttgatccatgtagccgaccccacttagtgggataaggcttggttgttgttgtt 2885721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 99 - 183
Target Start/End: Original strand, 7273299 - 7273383
Alignment:
Q  99 atatggtttataataaaatattatgacgtaatttaatctatgtagtcgacctcatttagtaggataagacttggttgtttttgtt 183  Q
    ||||||||||| ||| |  | ||||||||||||| ||| |||||| ||||| || ||||| ||||||| |||| ||||| |||||    
T  7273299 atatggtttatgatatagcactatgacgtaatttgatccatgtagccgaccccacttagtgggataaggcttgattgttgttgtt 7273383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 99 - 183
Target Start/End: Complemental strand, 9210787 - 9210703
Alignment:
Q  99 atatggtttataataaaatattatgacgtaatttaatctatgtagtcgacctcatttagtaggataagacttggttgtttttgtt 183  Q
    ||||||||||| ||| || |||||| |||||||| ||| ||||||  |||| || ||||| ||||||| ||| |||||| |||||    
T  9210787 atatggtttatgatacaacattatggcgtaatttgatccatgtagctgaccccacttagtgggataaggcttcgttgttgttgtt 9210703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 99 - 143
Target Start/End: Complemental strand, 26332956 - 26332912
Alignment:
Q  99 atatggtttataataaaatattatgacgtaatttaatctatgtag 143  Q
    ||||||||||| ||| |||||||||||||||||| ||| ||||||    
T  26332956 atatggtttatgatagaatattatgacgtaatttgatccatgtag 26332912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 99 - 183
Target Start/End: Complemental strand, 28208411 - 28208327
Alignment:
Q  99 atatggtttataataaaatattatgacgtaatttaatctatgtagtcgacctcatttagtaggataagacttggttgtttttgtt 183  Q
    ||||||||||| ||| || | |||| ||| |||| ||| |||||| ||||| || ||||| ||||||| |||||||||| |||||    
T  28208411 atatggtttatgatagaacactatggcgtcatttgatccatgtagccgaccccacttagtgggataaggcttggttgttgttgtt 28208327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 120 - 182
Target Start/End: Complemental strand, 1615285 - 1615223
Alignment:
Q  120 tatgacgtaatttaatctatgtagtcgacctcatttagtaggataagacttggttgtttttgt 182  Q
    |||||||| |||| ||| |||||| |||||||||||||| |||||||||||||||||| ||||    
T  1615285 tatgacgtcatttgatccatgtagccgacctcatttagtgggataagacttggttgttgttgt 1615223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 99 - 183
Target Start/End: Complemental strand, 34588 - 34504
Alignment:
Q  99 atatggtttataataaaatattatgacgtaatttaatctatgtagtcgacctcatttagtaggataagacttggttgtttttgtt 183  Q
    ||||||||||| ||| || |||||| |||||||| ||| ||||||  |||| || ||||| |||||||||||||||||| |||||    
T  34588 atatggtttatgatagaacattatggcgtaatttgatccatgtagctgaccccacttagtgggataagacttggttgttgttgtt 34504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 99 - 177
Target Start/End: Original strand, 30031455 - 30031533
Alignment:
Q  99 atatggtttataataaaatattatgacgtaatttaatctatgtagtcgacctcatttagtaggataagacttggttgtt 177  Q
    ||||||||||| ||| || | |||| |||||||| ||| |||||| |||||||| ||||| ||||||| ||||||||||    
T  30031455 atatggtttatgatagaacactatggcgtaatttgatccatgtagccgacctcacttagtgggataaggcttggttgtt 30031533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 99 - 164
Target Start/End: Complemental strand, 7513073 - 7513008
Alignment:
Q  99 atatggtttataataaaatattatgacgtaatttaatctatgtagtcgacctcatttagtaggata 164  Q
    ||||||||||| ||| || ||||||||||||||| ||||||||||| |||| || ||||| |||||    
T  7513073 atatggtttatgatagaacattatgacgtaatttgatctatgtagttgaccccacttagtgggata 7513008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 99 - 183
Target Start/End: Original strand, 12890774 - 12890858
Alignment:
Q  99 atatggtttataataaaatattatgacgtaatttaatctatgtagtcgacctcatttagtaggataagacttggttgtttttgtt 183  Q
    ||||||||||| ||| || | |||| |||||||| ||| |||||| ||||| || ||||| ||||||| |||||||||| |||||    
T  12890774 atatggtttatgatagaacactatggcgtaatttgatccatgtagccgaccccacttagtgggataaggcttggttgttgttgtt 12890858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 99 - 182
Target Start/End: Original strand, 5096033 - 5096116
Alignment:
Q  99 atatggtttataataaaatattatgacgtaatttaatctatgtagtcgacctcatttagtaggataagacttggttgtttttgt 182  Q
    ||||||||||| ||| || |||||| |||||||| |||||||||| ||| | || ||||| |||||||  ||||||||| ||||    
T  5096033 atatggtttatgatagaacattatggcgtaatttgatctatgtagccgatcccacttagtgggataaggtttggttgttgttgt 5096116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 99 - 177
Target Start/End: Original strand, 608360 - 608438
Alignment:
Q  99 atatggtttataataaaatattatgacgtaatttaatctatgtagtcgacctcatttagtaggataagacttggttgtt 177  Q
    ||||||||| | ||| |||| |||||||| |||| ||| |||||| |||||  | ||||| ||||||||||||||||||    
T  608360 atatggtttttgatagaatactatgacgtcatttgatccatgtagccgaccctacttagtgggataagacttggttgtt 608438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 99 - 183
Target Start/End: Complemental strand, 3206542 - 3206458
Alignment:
Q  99 atatggtttataataaaatattatgacgtaatttaatctatgtagtcgacctcatttagtaggataagacttggttgtttttgtt 183  Q
    ||||||||| ||||| || | |||| ||| |||| ||| |||||| ||||| || ||||| ||||||||||||||| || |||||    
T  3206542 atatggtttttaatagaacactatggcgtcatttgatccatgtagccgaccccacttagtgggataagacttggttattgttgtt 3206458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 37; Significance: 0.000000000006; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 99 - 183
Target Start/End: Original strand, 11675729 - 11675813
Alignment:
Q  99 atatggtttataataaaatattatgacgtaatttaatctatgtagtcgacctcatttagtaggataagacttggttgtttttgtt 183  Q
    ||||||||||| ||| || |||||| |||| ||||||| |||||| ||||| || ||||| ||||||| |||||||||| |||||    
T  11675729 atatggtttatgatagaacattatggcgtagtttaatccatgtagccgaccccacttagttggataaggcttggttgttgttgtt 11675813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 99 - 185
Target Start/End: Original strand, 18855806 - 18855892
Alignment:
Q  99 atatggtttataataaaatattatgacgtaatttaatctatgtagtcgacctcatttagtaggataagacttggttgtttttgttat 185  Q
    ||||||||||| ||| || |||||  | |||||| ||| |||||| ||||| || ||||| |||||||||||||||||| |||||||    
T  18855806 atatggtttatgatagaacattatagcataatttgatccatgtagccgaccccacttagtgggataagacttggttgttgttgttat 18855892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 103 - 186
Target Start/End: Original strand, 7678681 - 7678763
Alignment:
Q  103 ggtttataataaaatattatgacgtaatttaatctatgtagtcgacctcatttagtaggataagacttggttgtttttgttata 186  Q
    |||||||||||||  ||||||| ||| ||| ||| |||||| ||||| || ||||| |||||| ||||||||||| ||||||||    
T  7678681 ggtttataataaac-attatgaggtagtttgatccatgtagccgaccccacttagtgggataaaacttggttgttgttgttata 7678763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 99 - 182
Target Start/End: Complemental strand, 43557916 - 43557833
Alignment:
Q  99 atatggtttataataaaatattatgacgtaatttaatctatgtagtcgacctcatttagtaggataagacttggttgtttttgt 182  Q
    ||||||||||| ||| || |||||||| ||| || |||||||||| ||||| || ||||| ||||||| | |||||||| ||||    
T  43557916 atatggtttatgatagaacattatgacttaagttgatctatgtagccgaccccacttagtgggataaggcctggttgttgttgt 43557833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 118 - 183
Target Start/End: Complemental strand, 7359325 - 7359260
Alignment:
Q  118 attatgacgtaatttaatctatgtagtcgacctcatttagtaggataagacttggttgtttttgtt 183  Q
    ||||||||||||||| ||| ||||||  |||| || ||||| ||| |||||||||||||| |||||    
T  7359325 attatgacgtaatttgatccatgtagctgaccccacttagtgggacaagacttggttgttgttgtt 7359260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 100 - 176
Target Start/End: Original strand, 14667971 - 14668047
Alignment:
Q  100 tatggtttataataaaatattatgacgtaatttaatctatgtagtcgacctcatttagtaggataagacttggttgt 176  Q
    |||||||||| ||| || ||||||  ||||||| ||| |||||  ||||| || ||||| |||||||||||||||||    
T  14667971 tatggtttatgatagaacattatggtgtaatttgatccatgtaaccgaccccacttagtgggataagacttggttgt 14668047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 99 - 183
Target Start/End: Original strand, 20367092 - 20367176
Alignment:
Q  99 atatggtttataataaaatattatgacgtaatttaatctatgtagtcgacctcatttagtaggataagacttggttgtttttgtt 183  Q
    ||||||||||| | | || ||||||||||||||| ||| || ||| | ||| || || |||||||||| |||||||||| |||||    
T  20367092 atatggtttatgacataacattatgacgtaatttgatccatatagccaaccccacttggtaggataaggcttggttgttgttgtt 20367176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 37; Significance: 0.000000000006; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 99 - 183
Target Start/End: Complemental strand, 12520145 - 12520061
Alignment:
Q  99 atatggtttataataaaatattatgacgtaatttaatctatgtagtcgacctcatttagtaggataagacttggttgtttttgtt 183  Q
    ||||||||||| |||||| | |||| |||||||| ||| |||||| ||||| || ||||| ||||||| |||||||||| |||||    
T  12520145 atatggtttatgataaaacactatggcgtaatttgatccatgtagccgaccccacttagtgggataaggcttggttgttgttgtt 12520061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 100 - 182
Target Start/End: Complemental strand, 10516831 - 10516749
Alignment:
Q  100 tatggtttataataaaatattatgacgtaatttaatctatgtagtcgacctcatttagtaggataagacttggttgtttttgt 182  Q
    |||| ||||| ||||||||||||| |||||||| ||| ||||||  || |||| ||||| ||||||| |||||||||| ||||    
T  10516831 tatgatttatgataaaatattatggcgtaatttgatccatgtagctgatctcacttagtgggataaggcttggttgttgttgt 10516749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 99 - 183
Target Start/End: Complemental strand, 9531683 - 9531599
Alignment:
Q  99 atatggtttataataaaatattatgacgtaatttaatctatgtagtcgacctcatttagtaggataagacttggttgtttttgtt 183  Q
    ||||||||||| ||  || |||||| |||||||| ||| |||||| ||||| || ||||| ||||||| |||||||||| |||||    
T  9531683 atatggtttatgatggaacattatggcgtaatttgatccatgtagccgaccccacttagtgggataaggcttggttgttgttgtt 9531599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 99 - 183
Target Start/End: Original strand, 12734899 - 12734983
Alignment:
Q  99 atatggtttataataaaatattatgacgtaatttaatctatgtagtcgacctcatttagtaggataagacttggttgtttttgtt 183  Q
    ||||||||||| ||| || | ||||  ||||||| ||| |||||||||||| || ||||| ||||||| |||||||||| |||||    
T  12734899 atatggtttatgatagaacactatggtgtaatttgatccatgtagtcgaccccacttagtgggataaggcttggttgttgttgtt 12734983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 99 - 186
Target Start/End: Complemental strand, 13443991 - 13443904
Alignment:
Q  99 atatggtttataataaaatattatgacgtaatttaatctatgtagtcgacctcatttagtaggataagacttggttgtttttgttata 186  Q
    ||||||||||| ||| || |||||| ||| |||| ||| |||||| ||||| |||||||| ||||||| ||| ||| || ||||||||    
T  13443991 atatggtttattatagaacattatggcgtcatttgatcgatgtagccgaccccatttagtgggataaggcttagttattgttgttata 13443904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 99 - 182
Target Start/End: Complemental strand, 13474297 - 13474214
Alignment:
Q  99 atatggtttataataaaatattatgacgtaatttaatctatgtagtcgacctcatttagtaggataagacttggttgtttttgt 182  Q
    ||||||||||| |||| | |||||| | |||||| ||||||  |||||||  || ||||| |||||||||||||||||| ||||    
T  13474297 atatggtttatgataatacattatggcataatttgatctattgagtcgactccacttagtgggataagacttggttgttgttgt 13474214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 99 - 185
Target Start/End: Complemental strand, 9394713 - 9394627
Alignment:
Q  99 atatggtttataataaaatattatgacgtaatttaatctatgtagtcgacctcatttagtaggataagacttggttgtttttgttat 185  Q
    ||||||||||||||| |  |||||| | |||||| ||| |||||| | ||| || || |||||||||||||| |||||| |||||||    
T  9394713 atatggtttataatagagcattatggcttaattttatccatgtagccaaccccacttggtaggataagactttgttgttgttgttat 9394627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 99 - 183
Target Start/End: Original strand, 9496065 - 9496149
Alignment:
Q  99 atatggtttataataaaatattatgacgtaatttaatctatgtagtcgacctcatttagtaggataagacttggttgtttttgtt 183  Q
    ||||||||||| ||| || |||||| |||||||| ||| |||||| | ||| || ||||| ||| ||| |||||||||| |||||    
T  9496065 atatggtttatgatagaacattatggcgtaatttgatccatgtagccaaccccacttagtgggacaaggcttggttgttgttgtt 9496149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 126 - 182
Target Start/End: Original strand, 11412936 - 11412992
Alignment:
Q  126 gtaatttaatctatgtagtcgacctcatttagtaggataagacttggttgtttttgt 182  Q
    ||||||| ||| |||||| ||| |||| ||||||||||||| |||||||||| ||||    
T  11412936 gtaatttgatccatgtagccgaactcacttagtaggataaggcttggttgttgttgt 11412992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 36; Significance: 0.00000000002; HSPs: 10)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 99 - 182
Target Start/End: Complemental strand, 40106703 - 40106620
Alignment:
Q  99 atatggtttataataaaatattatgacgtaatttaatctatgtagtcgacctcatttagtaggataagacttggttgtttttgt 182  Q
    ||||||||||| ||| || |||||||| |||||| ||| ||||||| |||| || ||||| ||||||| |||||||||| ||||    
T  40106703 atatggtttatgatagaacattatgacataatttgatcaatgtagtggaccccacttagtgggataaggcttggttgttgttgt 40106620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 99 - 185
Target Start/End: Original strand, 54128578 - 54128664
Alignment:
Q  99 atatggtttataataaaatattatgacgtaatttaatctatgtagtcgacctcatttagtaggataagacttggttgtttttgttat 185  Q
    ||||||||||| ||| || |||||| | |||||| ||| |||||| ||||| || ||||| ||||||| |||||||||| |||||||    
T  54128578 atatggtttatgatagaacattatggcataatttgatccatgtaggcgaccccacttagtgggataaggcttggttgttgttgttat 54128664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 102 - 182
Target Start/End: Original strand, 38850323 - 38850403
Alignment:
Q  102 tggtttataataaaatattatgacgtaatttaatctatgtagtcgacctcatttagtaggataagacttggttgtttttgt 182  Q
    |||||||| ||| || | ||||||||||||| ||| |||||| ||||| || |||||||||||| |||| |||||| ||||    
T  38850323 tggtttatgatagaacactatgacgtaatttgatccatgtagccgaccccacttagtaggataaaacttagttgttgttgt 38850403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 99 - 183
Target Start/End: Original strand, 39208807 - 39208891
Alignment:
Q  99 atatggtttataataaaatattatgacgtaatttaatctatgtagtcgacctcatttagtaggataagacttggttgtttttgtt 183  Q
    ||||||||||| ||| || ||||||||||||||| ||| ||||||  |||| || ||||| ||||| | |||||||||| |||||    
T  39208807 atatggtttatgatagaacattatgacgtaatttgatccatgtagaggaccccagttagtgggatatggcttggttgttgttgtt 39208891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 99 - 183
Target Start/End: Original strand, 48508434 - 48508518
Alignment:
Q  99 atatggtttataataaaatattatgacgtaatttaatctatgtagtcgacctcatttagtaggataagacttggttgtttttgtt 183  Q
    ||||||||||| ||| || | |||| |||||||| ||| |||||| ||||| || ||||| ||||||| |||||||||| |||||    
T  48508434 atatggtttatgatagaacactatggcgtaatttgatccatgtagccgaccccacttagtgggataaggcttggttgttgttgtt 48508518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 99 - 182
Target Start/End: Complemental strand, 14415342 - 14415260
Alignment:
Q  99 atatggtttataataaaatattatgacgtaatttaatctatgtagtcgacctcatttagtaggataagacttggttgtttttgt 182  Q
    ||||||||||| ||| || |||||| | |||||| ||| |||||| ||||| || ||||| |||||||||||||||||| ||||    
T  14415342 atatggtttatgatataacattatggcataatttgatc-atgtagccgaccccacttagtgggataagacttggttgttgttgt 14415260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 99 - 177
Target Start/End: Complemental strand, 23534653 - 23534576
Alignment:
Q  99 atatggtttataataaaatattatgacgtaatttaatctatgtagtcgacctcatttagtaggataagacttggttgtt 177  Q
    ||||| ||||| ||| || |||||| |||||||| ||| ||||||||||||||| || || ||||||| ||||||||||    
T  23534653 atatgatttatgatagaacattatggcgtaatttgatccatgtagtcgacctcactttgt-ggataaggcttggttgtt 23534576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 104 - 182
Target Start/End: Complemental strand, 30797900 - 30797822
Alignment:
Q  104 gtttataataaaatattatgacgtaatttaatctatgtagtcgacctcatttagtaggataagacttggttgtttttgt 182  Q
    |||||| ||| || ||||||||||||||| |||||||||  ||||| || ||||| | ||||| |||||||||| ||||    
T  30797900 gtttatgatagaacattatgacgtaatttgatctatgtaaccgaccccacttagtggaataaggcttggttgttgttgt 30797822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 118 - 183
Target Start/End: Complemental strand, 45374541 - 45374476
Alignment:
Q  118 attatgacgtaatttaatctatgtagtcgacctcatttagtaggataagacttggttgtttttgtt 183  Q
    |||||| |||||||||||| ||||||  |||| || ||||| ||||||| |||||||||| |||||    
T  45374541 attatggcgtaatttaatccatgtagctgaccccacttagtgggataaggcttggttgttgttgtt 45374476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 123 - 183
Target Start/End: Complemental strand, 43694830 - 43694770
Alignment:
Q  123 gacgtaatttaatctatgtagtcgacctcatttagtaggataagacttggttgtttttgtt 183  Q
    ||||| |||| |||||||||||||||| |||||||| ||||||  || ||||||| |||||    
T  43694830 gacgtcatttgatctatgtagtcgaccccatttagtgggataaagctgggttgttgttgtt 43694770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0491 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0491
Description:

Target: scaffold0491; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 108 - 176
Target Start/End: Original strand, 3645 - 3713
Alignment:
Q  108 ataataaaatattatgacgtaatttaatctatgtagtcgacctcatttagtaggataagacttggttgt 176  Q
    |||||| || ||||||||||||||| ||| | |||| ||||| || ||||| |||||||||||||||||    
T  3645 ataatagaacattatgacgtaatttgatccaagtagccgaccccacttagtgggataagacttggttgt 3713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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