View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5489_low_36 (Length: 239)
Name: NF5489_low_36
Description: NF5489
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5489_low_36 |
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Alignment Details
Target: chr5 (Bit Score: 201; Significance: 1e-110; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 5 - 229
Target Start/End: Original strand, 10396404 - 10396627
Alignment:
| Q |
5 |
acaaatattttcgtgctacagacacgaatgtggtatcttcactttatggaccctattgaacatgtttctctttatttctaccttgtattttcatcttcat |
104 |
Q |
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| T |
10396404 |
acaaatattttcgtgctaaagacacgaatgtggtatcttcacttgatggaccctattga-catgtttctctttatttctacgttgtattttcatcttcat |
10396502 |
T |
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| Q |
105 |
atcctccttttatattttcaatcgatattgagacctctttttataactgttcaagtaattaacttagctaaccatgcacttcctgcgatagtacttccac |
204 |
Q |
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| T |
10396503 |
atcctccttttatattttcaatcgatattgagacctctttttataactgttcaagtaattaacttagctaaccatgcacttcctgcgatggtacttccac |
10396602 |
T |
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| Q |
205 |
cctctcacctttgttgtgcttcatc |
229 |
Q |
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| T |
10396603 |
cctctcacctttgttgtgcttcatc |
10396627 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 77; Significance: 7e-36; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 8 - 140
Target Start/End: Original strand, 8913380 - 8913512
Alignment:
| Q |
8 |
aatattttcgtgctacagacacgaatgtggtatcttcactttatggaccctattgaacatgtttctctttatttctaccttgtattttcatcttcatatc |
107 |
Q |
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| T |
8913380 |
aatattttcatgttacacacgcgaatgtggtatcttcacttggtggaccctatcgaacatgtttctctctatttcaatgttgtgtttttatcttcatatc |
8913479 |
T |
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| Q |
108 |
ctccttttatattttcaatcgatattgagacct |
140 |
Q |
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| T |
8913480 |
ctccttttatattttcagtcgatattgagacct |
8913512 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 148 - 229
Target Start/End: Original strand, 8913661 - 8913745
Alignment:
| Q |
148 |
taactgttcaagtaattaacttagctaaccatgcacttcctgcgatagtacttc---caccctctcacctttgttgtgcttcatc |
229 |
Q |
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| T |
8913661 |
taacagttcaagtaaataagttagctagccatgcacttcctgcaatggtacatctttcaccctctcacctttgttgtgcttcatc |
8913745 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 50; Significance: 9e-20; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 68 - 145
Target Start/End: Original strand, 48069146 - 48069223
Alignment:
| Q |
68 |
gtttctctttatttctaccttgtattttcatcttcatatcctccttttatattttcaatcgatattgagacctctttt |
145 |
Q |
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| T |
48069146 |
gtttctctctatttctatattgggttttcatcttcatatcatccttttatattttcaatcgttattgagacctctttt |
48069223 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 39
Target Start/End: Original strand, 48069088 - 48069126
Alignment:
| Q |
1 |
cacgacaaatattttcgtgctacagacacgaatgtggta |
39 |
Q |
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| T |
48069088 |
cacgataaatattttcgtgctacacacacgaatgtggta |
48069126 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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