View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5489_low_37 (Length: 238)
Name: NF5489_low_37
Description: NF5489
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5489_low_37 |
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Alignment Details
Target: chr5 (Bit Score: 202; Significance: 1e-110; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 1 - 220
Target Start/End: Complemental strand, 19845327 - 19845111
Alignment:
| Q |
1 |
tatctaatgtgatgtcttttaataaagtagtaattgtatgacgctatcttgcaataatactaatattgaattataaaatacattacaacaatacaacatc |
100 |
Q |
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| T |
19845327 |
tatctaatgtgatgtcttttaataaagta---attgtatgacgctatcttgcaataatactaatattgaattataaaatacattacaacaatacaacatc |
19845231 |
T |
|
| Q |
101 |
taacaattgtgaatgcatataaaatctataatatcatatttggttttaagcaaataattattccactagaaaagtcggtttcaagagattccaatacaaa |
200 |
Q |
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| T |
19845230 |
taacaattgtgaatgcatataaaatctatcatatcatatttggttttaagcaaataattattccactagaaaagtcggtttcaagagattccaatacaaa |
19845131 |
T |
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| Q |
201 |
catgtattttaagctttgtg |
220 |
Q |
| |
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|||||||||||||||||||| |
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| T |
19845130 |
catgtattttaagctttgtg |
19845111 |
T |
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