View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5489_low_41 (Length: 205)
Name: NF5489_low_41
Description: NF5489
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5489_low_41 |
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Alignment Details
Target: chr3 (Bit Score: 156; Significance: 4e-83; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 156; E-Value: 4e-83
Query Start/End: Original strand, 16 - 179
Target Start/End: Original strand, 51876095 - 51876258
Alignment:
| Q |
16 |
aatatattaataattttccttgccatcgacttcgtttaaaaattttattgctatttttaataccaattcatcgaccagacctaaatgtttggctgctgta |
115 |
Q |
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| T |
51876095 |
aatatattaataattttccttgccatcgacttcgtttaaaaattttattgctatttttcataccaattcatcgaccagacctaaatgtttggctgctgta |
51876194 |
T |
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| Q |
116 |
caatagtataaatataaataaaattaattacatgcaccgtacacatttatttataatggagatg |
179 |
Q |
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| T |
51876195 |
caatagtataaatataaataaaattaattacatgcaccgtacatatttatttataatggagatg |
51876258 |
T |
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