View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5489_low_6 (Length: 524)
Name: NF5489_low_6
Description: NF5489
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5489_low_6 |
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Alignment Details
Target: chr3 (Bit Score: 502; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 502; E-Value: 0
Query Start/End: Original strand, 1 - 522
Target Start/End: Complemental strand, 55173303 - 55172782
Alignment:
| Q |
1 |
gctcagtacagagtatttggtgatccagtatcacagagatctgctgaagatattgccttctcagttgcccgattcttctccaaaaatggaaatctggtca |
100 |
Q |
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| T |
55173303 |
gctcagtacagagtatttggtgatccagtatcacagagatctgctgaagatattgccttctcagttgcccgattcttctccaaaaatggaaatctggtca |
55173204 |
T |
|
| Q |
101 |
actactatatggtaattgctaatattatgtactaatgtagcaaactaactcaattgaatgtgaaattaactatgaatgaattgcagtaccatggtggaac |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
55173203 |
actactatatggtaattgctaatattatgtactaatgtagcaaactaactcaattgaatgtgaaattaactatgaatgaattgcagtaccatggtggaac |
55173104 |
T |
|
| Q |
201 |
aaactttggaagaacaacctctgccttcacaacaacccgttattacgatgaggcacctcttgatgaatacggtatggagaggcagccaaaacggagccac |
300 |
Q |
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||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
55173103 |
aaactttggaagaacaacctctgcctttacaacaacccgttattacgatgaggcacctcttgatgaatacggtatggagaggcagccaaaatggagccac |
55173004 |
T |
|
| Q |
301 |
cttagggacgcccacaaggctttgctcctttgcagaaaggctattctcggtggtgttcccactgtccaaaagctcaacgactaccacgaggtacatataa |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
55173003 |
cttagggacgcccacaaggctttgctcctttgcagaaaggctattctcggtggtgttcccactgtccaaaagctcaacgactaccacgaggtacatataa |
55172904 |
T |
|
| Q |
401 |
taatcattgttaagctatatatgcaacatgcgtgtatcttcatcatgataactttgagaaatatataatgcatcgtgcaggttagaatctttgagaagcc |
500 |
Q |
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| T |
55172903 |
taatcattgttaagctatatatgcaacatgcgtgtatctctatcatgataactttgagaaatatataatgcatcgtgcaggttagaatctttgagaagcc |
55172804 |
T |
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| Q |
501 |
tggaacaagcacaggttctgct |
522 |
Q |
| |
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| T |
55172803 |
tggaacaagcacatgttctgct |
55172782 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 10 - 115
Target Start/End: Original strand, 27721910 - 27722015
Alignment:
| Q |
10 |
agagtatttggtgatccagtatcacagagatctgctgaagatattgccttctcagttgcccgattcttctccaaaaatggaaatctggtcaactactata |
109 |
Q |
| |
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||||||||||| |||||| ||| || |||||||| ||||| ||||||||||||||||| || |||||||| || ||||| | | ||||||||||||| |
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| T |
27721910 |
agagtatttggagatccaccatctcaaagatctgcagaagacattgccttctcagttgctcgcttcttctctaagcatggatctttagtcaactactata |
27722009 |
T |
|
| Q |
110 |
tggtaa |
115 |
Q |
| |
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|||||| |
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| T |
27722010 |
tggtaa |
27722015 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 193 - 266
Target Start/End: Original strand, 27722106 - 27722179
Alignment:
| Q |
193 |
ggtggaacaaactttggaagaacaacctctgccttcacaacaacccgttattacgatgaggcacctcttgatga |
266 |
Q |
| |
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||||||||||| ||||| ||||||||||| ||||| |||||||| ||||| ||||| || || ||||||||||| |
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| T |
27722106 |
ggtggaacaaattttggtagaacaacctcagcctttacaacaacacgttactacgacgaagctcctcttgatga |
27722179 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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