View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5489_low_8 (Length: 490)

Name: NF5489_low_8
Description: NF5489
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5489_low_8
NF5489_low_8
[»] chr6 (11 HSPs)
chr6 (132-257)||(28092867-28092993)
chr6 (411-477)||(20475479-20475545)
chr6 (396-478)||(6869785-6869867)
chr6 (24-189)||(28092736-28092894)
chr6 (418-475)||(20517317-20517374)
chr6 (79-119)||(16321484-16321524)
chr6 (79-119)||(16333632-16333672)
chr6 (83-119)||(17824278-17824314)
chr6 (215-259)||(18706058-18706102)
chr6 (215-259)||(18711993-18712037)
chr6 (215-259)||(24505120-24505164)
[»] scaffold0360 (1 HSPs)
scaffold0360 (191-263)||(512-584)
[»] chr8 (3 HSPs)
chr8 (178-263)||(5867186-5867272)
chr8 (141-262)||(12841193-12841314)
chr8 (209-258)||(18536923-18536972)
[»] chr1 (7 HSPs)
chr1 (24-119)||(34823093-34823188)
chr1 (394-480)||(13072601-13072690)
chr1 (207-261)||(19868368-19868422)
chr1 (86-119)||(4950709-4950742)
chr1 (86-119)||(26193283-26193316)
chr1 (207-243)||(13403407-13403443)
chr1 (207-243)||(30211262-30211298)
[»] scaffold0057 (1 HSPs)
scaffold0057 (24-105)||(65838-65919)
[»] chr4 (2 HSPs)
chr4 (207-262)||(18586235-18586290)
chr4 (215-260)||(11477194-11477239)
[»] chr3 (1 HSPs)
chr3 (211-262)||(11044437-11044488)
[»] scaffold0034 (1 HSPs)
scaffold0034 (86-119)||(7611-7644)
[»] chr7 (2 HSPs)
chr7 (207-262)||(40702217-40702272)
chr7 (215-260)||(14248236-14248281)
[»] chr2 (2 HSPs)
chr2 (207-262)||(38460774-38460829)
chr2 (215-259)||(574562-574606)
[»] scaffold0009 (1 HSPs)
scaffold0009 (139-189)||(267145-267195)


Alignment Details
Target: chr6 (Bit Score: 83; Significance: 4e-39; HSPs: 11)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 132 - 257
Target Start/End: Original strand, 28092867 - 28092993
Alignment:
Q  132 tcaagtatcatgatgaacacaacaacattatcaagtatcttgaagcacacaacaacata-tgatctatcttgttgcaacccagaaacattctgaagttca 230  Q
    ||||||||||||||||||||||||||||| ||||||||| |||||  |||||||||||  |||||||| |||||| || | |||||||||||||||||||    
T  28092867 tcaagtatcatgatgaacacaacaacattctcaagtatcctgaagagcacaacaacattctgatctatgttgttggaatctagaaacattctgaagttca 28092966  T
Q  231 gaatgttgatccaaactttcaagtaaa 257  Q
    |||||||||||||||||||||||||||    
T  28092967 gaatgttgatccaaactttcaagtaaa 28092993  T

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Target: chr6; HSP #2
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 411 - 477
Target Start/End: Original strand, 20475479 - 20475545
Alignment:
Q  411 tcactcaccctttccttcctcctttttgctttcatcaccaatcttttcctagctttctcatatgatg 477  Q
    ||||||||||||||||||||||| |||| |||||  ||||||||||  |||||||||||| ||||||    
T  20475479 tcactcaccctttccttcctcctgtttgttttcactaccaatctttcactagctttctcaaatgatg 20475545  T

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Target: chr6; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 396 - 478
Target Start/End: Complemental strand, 6869867 - 6869785
Alignment:
Q  396 atgaagtttgtttgctcactcaccctttccttcctcctttttgctttcatcaccaatcttttcctagctttctcatatgatga 478  Q
    |||||| ||||||  ||||||||||||||||||||  | |||||||||||||||| |||||   ||||||||||  |||||||    
T  6869867 atgaagcttgttttgtcactcaccctttccttccttatatttgctttcatcaccactctttcattagctttctctaatgatga 6869785  T

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Target: chr6; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 24 - 189
Target Start/End: Original strand, 28092736 - 28092894
Alignment:
Q  24 tgtgcaaatgacactactcatggacaaaaccccaaaatttacctgacacacatctaatgaatccagaaactcatcatacattcatctttgatgaacgcag 123  Q
    ||||||||| ||||||||||||| ||||||||  ||||| | ||||||| |||  | | || |||  ||| |||||||||||||| |||||||||| |||    
T  28092736 tgtgcaaataacactactcatgggcaaaacccataaattcatctgacacgcattaattaaacccatgaacacatcatacattcatgtttgatgaacccag 28092835  T
Q  124 caactttatcaagtatcatgatgaacacaacaacattatcaagtatcttgaagcacacaacaacat 189  Q
      |      ||||  ||||||||||||||| |||||| ||||||||| ||| | ||||||||||||    
T  28092836 gta------caag-gtcatgatgaacacaaaaacattctcaagtatcatgatgaacacaacaacat 28092894  T

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Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 418 - 475
Target Start/End: Original strand, 20517317 - 20517374
Alignment:
Q  418 ccctttccttcctcctttttgctttcatcaccaatcttttcctagctttctcatatga 475  Q
    |||||||||||||||| |||| ||||||||| |||||||  |||| ||||||| ||||    
T  20517317 ccctttccttcctcctctttgttttcatcacaaatctttcactagttttctcaaatga 20517374  T

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Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 79 - 119
Target Start/End: Original strand, 16321484 - 16321524
Alignment:
Q  79 aatgaatccagaaactcatcatacattcatctttgatgaac 119  Q
    |||||| |||||||||||||| ||||||||| |||||||||    
T  16321484 aatgaacccagaaactcatcagacattcatcattgatgaac 16321524  T

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Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 79 - 119
Target Start/End: Original strand, 16333632 - 16333672
Alignment:
Q  79 aatgaatccagaaactcatcatacattcatctttgatgaac 119  Q
    |||||| |||||||||||||| ||||||||| |||||||||    
T  16333632 aatgaacccagaaactcatcagacattcatcattgatgaac 16333672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 83 - 119
Target Start/End: Original strand, 17824278 - 17824314
Alignment:
Q  83 aatccagaaactcatcatacattcatctttgatgaac 119  Q
    ||||||||||||||||| ||||||||| |||||||||    
T  17824278 aatccagaaactcatcagacattcatcattgatgaac 17824314  T

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Target: chr6; HSP #9
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 215 - 259
Target Start/End: Complemental strand, 18706102 - 18706058
Alignment:
Q  215 aacattctgaagttcagaatgttgatccaaactttcaagtaaaag 259  Q
    |||||||||| |||||||||||| ||||| | |||||||||||||    
T  18706102 aacattctgatgttcagaatgttcatccagattttcaagtaaaag 18706058  T

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Target: chr6; HSP #10
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 215 - 259
Target Start/End: Complemental strand, 18712037 - 18711993
Alignment:
Q  215 aacattctgaagttcagaatgttgatccaaactttcaagtaaaag 259  Q
    |||||||||| |||||||||||| ||||| | |||||||||||||    
T  18712037 aacattctgatgttcagaatgttcatccagattttcaagtaaaag 18711993  T

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Target: chr6; HSP #11
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 215 - 259
Target Start/End: Complemental strand, 24505164 - 24505120
Alignment:
Q  215 aacattctgaagttcagaatgttgatccaaactttcaagtaaaag 259  Q
    ||||||||||||||||||||||| | ||| | |||||||||||||    
T  24505164 aacattctgaagttcagaatgttcacccatattttcaagtaaaag 24505120  T

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Target: scaffold0360 (Bit Score: 57; Significance: 1e-23; HSPs: 1)
Name: scaffold0360
Description:

Target: scaffold0360; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 191 - 263
Target Start/End: Original strand, 512 - 584
Alignment:
Q  191 tgatctatcttgttgcaacccagaaacattctgaagttcagaatgttgatccaaactttcaagtaaaagttgg 263  Q
    |||||||  ||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  512 tgatctacattgttgcaacctagaaacattctgaaattcagaatgttgatccaaactttcaagtaaaagttgg 584  T

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Target: chr8 (Bit Score: 55; Significance: 2e-22; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 178 - 263
Target Start/End: Complemental strand, 5867272 - 5867186
Alignment:
Q  178 acacaacaacata-tgatctatcttgttgcaacccagaaacattctgaagttcagaatgttgatccaaactttcaagtaaaagttgg 263  Q
    ||||||||||||  |||||||  || |||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  5867272 acacaacaacattctgatctacatttttgcaacccataaacattctgaagttcagaatgttgatccaaactttcaagtaaaaattgg 5867186  T

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Target: chr8; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 141 - 262
Target Start/End: Complemental strand, 12841314 - 12841193
Alignment:
Q  141 atgatgaacacaacaacattatcaagtatct-tgaagcacacaacaacata-tgatctatcttgttgcaacccagaaacattctgaagttcagaatgttg 238  Q
    ||||| |||||||||||||| | |||||| | ||||| ||||||||||||  |||| ||| |||||| |||||||||| | ||  ||||| |||||||||    
T  12841314 atgattaacacaacaacattctaaagtatttctgaagaacacaacaacattctgatgtattttgttg-aacccagaaatactcc-aagtttagaatgttg 12841217  T
Q  239 atccaaactttcaagtaaaagttg 262  Q
    ||| ||||||||||||||||||||    
T  12841216 atcaaaactttcaagtaaaagttg 12841193  T

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Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 209 - 258
Target Start/End: Original strand, 18536923 - 18536972
Alignment:
Q  209 cccagaaacattctgaagttcagaatgttgatccaaactttcaagtaaaa 258  Q
    ||||||||||||||||||||||||||||||||| | ||||| ||| ||||    
T  18536923 cccagaaacattctgaagttcagaatgttgatcaagacttttaagaaaaa 18536972  T

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Target: chr1 (Bit Score: 52; Significance: 1e-20; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 24 - 119
Target Start/End: Original strand, 34823093 - 34823188
Alignment:
Q  24 tgtgcaaatgacactactcatggacaaaaccccaaaatttacctgacacacatctaatgaatccagaaactcatcatacattcatctttgatgaac 119  Q
    |||||||||||||||||||||||||||| |||  ||||| | ||||||| ||||| ||||| ||| ||||||||||||||||||| | ||||||||    
T  34823093 tgtgcaaatgacactactcatggacaaagcccagaaattcatctgacacgcatctgatgaacccataaactcatcatacattcatgtgtgatgaac 34823188  T

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Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 394 - 480
Target Start/End: Complemental strand, 13072690 - 13072601
Alignment:
Q  394 taatgaagtttgtttgctcactcaccctttccttcctcctttttgctttcatc---accaatcttttcctagctttctcatatgatgatg 480  Q
    ||||||||||| |||  ||||| | | ||||||||||||||||||||||||||   |||||||||   ||||||||||||||||||||||    
T  13072690 taatgaagtttatttattcacttatcatttccttcctcctttttgctttcatcaccaccaatcttccactagctttctcatatgatgatg 13072601  T

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Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 207 - 261
Target Start/End: Complemental strand, 19868422 - 19868368
Alignment:
Q  207 aacccagaaacattctgaagttcagaatgttgatccaaactttcaagtaaaagtt 261  Q
    |||| ||||||||| |||||||||||||||| ||||| ||||||||| |||||||    
T  19868422 aacctagaaacattttgaagttcagaatgttaatccagactttcaagcaaaagtt 19868368  T

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Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 86 - 119
Target Start/End: Original strand, 4950709 - 4950742
Alignment:
Q  86 ccagaaactcatcatacattcatctttgatgaac 119  Q
    |||||||||||||||||||||||| |||||||||    
T  4950709 ccagaaactcatcatacattcatcattgatgaac 4950742  T

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Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 86 - 119
Target Start/End: Complemental strand, 26193316 - 26193283
Alignment:
Q  86 ccagaaactcatcatacattcatctttgatgaac 119  Q
    |||||||||||||||||||||||| |||||||||    
T  26193316 ccagaaactcatcatacattcatcattgatgaac 26193283  T

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Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 207 - 243
Target Start/End: Complemental strand, 13403443 - 13403407
Alignment:
Q  207 aacccagaaacattctgaagttcagaatgttgatcca 243  Q
    |||||||||| ||||||||||||| ||||||||||||    
T  13403443 aacccagaaagattctgaagttcaaaatgttgatcca 13403407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 207 - 243
Target Start/End: Original strand, 30211262 - 30211298
Alignment:
Q  207 aacccagaaacattctgaagttcagaatgttgatcca 243  Q
    |||||| ||||||||||||||||||||||||| ||||    
T  30211262 aacccataaacattctgaagttcagaatgttgttcca 30211298  T

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Target: scaffold0057 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: scaffold0057
Description:

Target: scaffold0057; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 24 - 105
Target Start/End: Original strand, 65838 - 65919
Alignment:
Q  24 tgtgcaaatgacactactcatggacaaaaccccaaaatttacctgacacacatctaatgaatccagaaactcatcatacatt 105  Q
    ||||||||||| |||||||||||||||| | |  ||||| |||||||| |||||| ||||| ||| ||| ||||||||||||    
T  65838 tgtgcaaatgatactactcatggacaaagctcataaattcacctgacatacatctgatgaacccaaaaaatcatcatacatt 65919  T

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Target: chr4 (Bit Score: 36; Significance: 0.00000000005; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 207 - 262
Target Start/End: Complemental strand, 18586290 - 18586235
Alignment:
Q  207 aacccagaaacattctgaagttcagaatgttgatccaaactttcaagtaaaagttg 262  Q
    |||||| ||||||||||||||||| |||||||||| | ||||||||| ||||||||    
T  18586290 aacccataaacattctgaagttcaaaatgttgatcaagactttcaagcaaaagttg 18586235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 215 - 260
Target Start/End: Original strand, 11477194 - 11477239
Alignment:
Q  215 aacattctgaagttcagaatgttgatccaaactttcaagtaaaagt 260  Q
    ||||||||||||||||||||||| | ||| | ||||||||||||||    
T  11477194 aacattctgaagttcagaatgtttacccagaatttcaagtaaaagt 11477239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 36; Significance: 0.00000000005; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 211 - 262
Target Start/End: Complemental strand, 11044488 - 11044437
Alignment:
Q  211 cagaaacattctgaagttcagaatgttgatccaaactttcaagtaaaagttg 262  Q
    ||||||||||||||||||||||||||||||| | |||||||||  |||||||    
T  11044488 cagaaacattctgaagttcagaatgttgatcaagactttcaagccaaagttg 11044437  T

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Target: scaffold0034 (Bit Score: 34; Significance: 0.0000000007; HSPs: 1)
Name: scaffold0034
Description:

Target: scaffold0034; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 86 - 119
Target Start/End: Original strand, 7611 - 7644
Alignment:
Q  86 ccagaaactcatcatacattcatctttgatgaac 119  Q
    ||||||||||||||||||||||||||||||||||    
T  7611 ccagaaactcatcatacattcatctttgatgaac 7644  T

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Target: chr7 (Bit Score: 32; Significance: 0.00000001; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 207 - 262
Target Start/End: Original strand, 40702217 - 40702272
Alignment:
Q  207 aacccagaaacattctgaagttcagaatgttgatccaaactttcaagtaaaagttg 262  Q
    |||||| ||||||||| ||||||||||||||||||   ||||||||| ||||||||    
T  40702217 aacccaaaaacattcttaagttcagaatgttgatcaggactttcaagcaaaagttg 40702272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 215 - 260
Target Start/End: Complemental strand, 14248281 - 14248236
Alignment:
Q  215 aacattctgaagttcagaatgttgatccaaactttcaagtaaaagt 260  Q
    ||||||||||||||||||||||| | ||| | ||||||||||||||    
T  14248281 aacattctgaagttcagaatgtttacccagaatttcaagtaaaagt 14248236  T

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Target: chr2 (Bit Score: 32; Significance: 0.00000001; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 207 - 262
Target Start/End: Original strand, 38460774 - 38460829
Alignment:
Q  207 aacccagaaacattctgaagttcagaatgttgatccaaactttcaagtaaaagttg 262  Q
    |||||||||||||||| |||||||||||||||||| | ||||| ||  ||||||||    
T  38460774 aacccagaaacattctaaagttcagaatgttgatcaagacttttaaccaaaagttg 38460829  T

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Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 215 - 259
Target Start/End: Original strand, 574562 - 574606
Alignment:
Q  215 aacattctgaagttcagaatgttgatccaaactttcaagtaaaag 259  Q
    |||||||||| |||||||||||| | ||||| |||||||||||||    
T  574562 aacattctgatgttcagaatgttcacccaaattttcaagtaaaag 574606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0009 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 139 - 189
Target Start/End: Complemental strand, 267195 - 267145
Alignment:
Q  139 tcatgatgaacacaacaacattatcaagtatcttgaagcacacaacaacat 189  Q
    |||||||||||||||||||||||| ||||||  | ||| ||||||||||||    
T  267195 tcatgatgaacacaacaacattatgaagtattctcaagaacacaacaacat 267145  T

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