View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5490-Insertion-1 (Length: 1015)
Name: NF5490-Insertion-1
Description: NF5490
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5490-Insertion-1 |
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Alignment Details
Target: chr1 (Bit Score: 227; Significance: 1e-124; HSPs: 6)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 227; E-Value: 1e-124
Query Start/End: Original strand, 739 - 1013
Target Start/End: Original strand, 8264117 - 8264395
Alignment:
| Q |
739 |
caaaaataaattcttatcaagcacgctcttttcatagtactataatataagttaccccatccgatttatcctttggaggtttctcaactctgacaacctc |
838 |
Q |
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| T |
8264117 |
caaaaataaattcttatcaagcacgctcttttcatagtactgtaatataagttaccccatccgatttatccttcggaggtttctcaactctgacaacctc |
8264216 |
T |
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| Q |
839 |
caagaacagttgcaaccactactccaccacctcttctc-aaaacatgattcaacctcgacaaccataactaaagtaatccttcttcaatcgagcaatgag |
937 |
Q |
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| T |
8264217 |
caagaacagttgcaactactactccaccacctcttctcaaaaacatgattcaacctcgacaaccataactaaagtaatccttcttcaatcgagcaatgag |
8264316 |
T |
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| Q |
938 |
caatatcgcacatttcaccatcactgacttgccctcaccctatttgaaa-gttactaga-tac-atcgaaatctctgag |
1013 |
Q |
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| T |
8264317 |
caatatcgcaaatttcaccatcactgacttaccctcaccctatttgaaaggttactagattacaatcgaaatctctgag |
8264395 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 74; E-Value: 2e-33
Query Start/End: Original strand, 670 - 747
Target Start/End: Original strand, 8262666 - 8262743
Alignment:
| Q |
670 |
tgaacctttatgttccaatgattcggaatatgtgttttgggacagttttcaccccactgaagccacttacaaaaataa |
747 |
Q |
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| T |
8262666 |
tgaacctttatgttccaatgattcggaatatgtgttttgggacagttttcaccccactgaagtcacttacaaaaataa |
8262743 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 52; E-Value: 3e-20
Query Start/End: Original strand, 7 - 98
Target Start/End: Original strand, 8270193 - 8270284
Alignment:
| Q |
7 |
agattcaattatggatacgggtaataataactacaaaaatacaatagttcgaagcaattttgcaccatatggaaaagattttccaggaggga |
98 |
Q |
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| T |
8270193 |
agattcaattacggatacaggaaataacaactttaaaaaaacaatagctcgatgcgattttgcaccatatggaaaagattttccaggaggga |
8270284 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 48; E-Value: 7e-18
Query Start/End: Original strand, 680 - 743
Target Start/End: Original strand, 8271976 - 8272039
Alignment:
| Q |
680 |
tgttccaatgattcggaatatgtgttttgggacagttttcaccccactgaagccacttacaaaa |
743 |
Q |
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| T |
8271976 |
tgttccaatgattcagaatatgtgttttgggacagttttcaccccacagaagccatgtacaaaa |
8272039 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 395 - 459
Target Start/End: Original strand, 8270934 - 8270998
Alignment:
| Q |
395 |
actggtgtgtcctttgcatctggtggcgctgggtatgatgatttcacatcaaatttaccggtatt |
459 |
Q |
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| T |
8270934 |
actggtgtgtgctttgcatctggtggcgctggatatgatgatttgacatcaaaattactggtatt |
8270998 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 684 - 730
Target Start/End: Original strand, 8245823 - 8245869
Alignment:
| Q |
684 |
ccaatgattcggaatatgtgttttgggacagttttcaccccactgaa |
730 |
Q |
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| T |
8245823 |
ccaacgatttggattatgtgttttgggacagttttcaccctactgaa |
8245869 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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