View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5490-Insertion-10 (Length: 385)
Name: NF5490-Insertion-10
Description: NF5490
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5490-Insertion-10 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 346; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 346; E-Value: 0
Query Start/End: Original strand, 8 - 385
Target Start/End: Complemental strand, 15180681 - 15180304
Alignment:
| Q |
8 |
attagcatcccctaagaaaaaaccattagtgacatgaacttgaacaggatcttccatgactatactattataatccatgtaacaattatcaattcttgtt |
107 |
Q |
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| T |
15180681 |
attagcatctcctaagaaaaaaccatcagtgacatgaacttgaacaggatcttccatgactatactattataatccatgtaacaattatcaattcttgtt |
15180582 |
T |
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| Q |
108 |
tgtgaattcccagctaatttcaacaaaattccaattccaccaaaacctgttgctttgttataacaatgcacacctgtgattatgttagcttgtcccctaa |
207 |
Q |
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| T |
15180581 |
tgtgaattccctgctaacttcaacaaaattccaattccaccaaaacctgttgctttgttataacaatgcacacctgtgattatgttagcttgtcccctaa |
15180482 |
T |
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| Q |
208 |
caacaattccaatggctgctgagaaaattgcgacatcagtgatagcattgtcgttgctagcaagatcaattgcagttcccgaaaattgtctttcgccttt |
307 |
Q |
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| T |
15180481 |
caacaattccaatggctgctgagaaaattgcgacatcggtgatagcattgtcattgctagcaagatcaattgcagttccagaaaattgtctttcgccttt |
15180382 |
T |
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| Q |
308 |
gtctccgccgactgttgagtgttgtccaagaaaactacttgatatgaaggtttcatggccactttgaactttaattcc |
385 |
Q |
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| T |
15180381 |
gtctccaccgactgttgagtgttgtccaagaaaactacttgatatgaaggtttcatggccactttgaactttaattcc |
15180304 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 86; Significance: 5e-41; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 86; E-Value: 5e-41
Query Start/End: Original strand, 8 - 364
Target Start/End: Original strand, 38859212 - 38859568
Alignment:
| Q |
8 |
attagcatcccctaagaaaaa-accattagtgacatgaacttgaacaggatcttccatgactatactattataatccatgtaacaattatcaattcttgt |
106 |
Q |
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| T |
38859212 |
attagcatcccc-aagaaatagacaattagtgacatgaacttgaacagggtcttccgttactataccagtataatccatataacagttgtcaattctagt |
38859310 |
T |
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| Q |
107 |
ttgtgaattcccagctaatttcaacaaaattccaattccaccaaaacctgttgctttgttataacaatgcacacctgtgattatgttagcttgtccccta |
206 |
Q |
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| T |
38859311 |
taaagaatttcctgccaatttcactaagatacctatacctccaaatcctgctgctttgttataacaatgcacccctgatagaatgttagcctgacctctt |
38859410 |
T |
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| Q |
207 |
acaacaattccaatggctgctgagaaaattgcgacatcagtgatagcattgtcgttgctagcaagatcaattgcagttcccgaaaattgtctttcgcctt |
306 |
Q |
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| T |
38859411 |
agcacaataccagtggctgccgagaaaatcgcgacatcagtgattgcattgtcattactagcaagatcaataccgaccccggaatagtccttctcgccat |
38859510 |
T |
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| Q |
307 |
tgtctccgccgactgttgagtgttgtccaagaaaactacttgatatgaaggtttcatg |
364 |
Q |
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| T |
38859511 |
ggtcaccgccaactgttgagtgttgtccaagaaaacaacttgatatgaatgtctcatg |
38859568 |
T |
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