View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5490-Insertion-12 (Length: 71)
Name: NF5490-Insertion-12
Description: NF5490
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5490-Insertion-12 |
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| [»] chr4 (6 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 60; Significance: 2e-26; HSPs: 6)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 60; E-Value: 2e-26
Query Start/End: Original strand, 8 - 71
Target Start/End: Complemental strand, 26085519 - 26085456
Alignment:
| Q |
8 |
attaccactgtaatcattggagttcttgctggatgcatcatagttttcttttttcctaatgact |
71 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
26085519 |
attaccactgtaatcattggagttcttgctggatgcatcatagttttctattttcctaatgact |
26085456 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 56; E-Value: 6e-24
Query Start/End: Original strand, 8 - 71
Target Start/End: Complemental strand, 26056282 - 26056219
Alignment:
| Q |
8 |
attaccactgtaatcattggagttcttgctggatgcatcatagttttcttttttcctaatgact |
71 |
Q |
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||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||| |
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| T |
26056282 |
attaccactgtaatcattggagttcttactggatgcatcatagttttcttttttcctaaagact |
26056219 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 56; E-Value: 6e-24
Query Start/End: Original strand, 8 - 71
Target Start/End: Complemental strand, 26067944 - 26067881
Alignment:
| Q |
8 |
attaccactgtaatcattggagttcttgctggatgcatcatagttttcttttttcctaatgact |
71 |
Q |
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||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||| |
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| T |
26067944 |
attaccactgtaatcattggagttcttactggatgcatcatagttttcttttttcctaaagact |
26067881 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 56; E-Value: 6e-24
Query Start/End: Original strand, 8 - 71
Target Start/End: Complemental strand, 26111856 - 26111793
Alignment:
| Q |
8 |
attaccactgtaatcattggagttcttgctggatgcatcatagttttcttttttcctaatgact |
71 |
Q |
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|
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
26111856 |
attaccactgtaatcattggagttcttattggatgcatcatagttttcttttttcctaatgact |
26111793 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 47; E-Value: 1e-18
Query Start/End: Original strand, 9 - 71
Target Start/End: Complemental strand, 26128809 - 26128747
Alignment:
| Q |
9 |
ttaccactgtaatcattggagttcttgctggatgcatcatagttttcttttttcctaatgact |
71 |
Q |
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||||| |||||||||| | ||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
26128809 |
ttaccgctgtaatcatagtagttcttactggatgcatcatagttttcttttttcctaatgact |
26128747 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 43; E-Value: 3e-16
Query Start/End: Original strand, 9 - 71
Target Start/End: Complemental strand, 26121382 - 26121320
Alignment:
| Q |
9 |
ttaccactgtaatcattggagttcttgctggatgcatcatagttttcttttttcctaatgact |
71 |
Q |
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|||||||||||||||||||||||||| |||||||||| || |||||| |||||||||||||| |
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| T |
26121382 |
ttaccactgtaatcattggagttcttattggatgcatcttacttttctattttcctaatgact |
26121320 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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