View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5490-Insertion-3 (Length: 985)
Name: NF5490-Insertion-3
Description: NF5490
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5490-Insertion-3 |
 | |
|
| [»] chr2 (4 HSPs) |
| |
|
Alignment Details
Target: chr2 (Bit Score: 536; Significance: 0; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 536; E-Value: 0
Query Start/End: Original strand, 350 - 985
Target Start/End: Original strand, 36521044 - 36521667
Alignment:
| Q |
350 |
catccaaaattttgaggcttaaagcacttgcttgggtttggcccttaggtcggccctggactagataagaagatatagttactaaactgaatatcagttt |
449 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| | | |||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36521044 |
catccaaaattttgaggcttaaagcacttgcttgggtt---------gcttggccctagactagataagaagatatagttactaaactgaatatcagttt |
36521134 |
T |
|
| Q |
450 |
agcaaaaaccacaagatatgtcatgaatgggcagacattgctcccttgtagccaaaacctctagatgagatcgggaaatgaataaaaggagtggtggcag |
549 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
36521135 |
agcaaaaaacacaagatatgtcatgaatgggcagacattgctcccttgtagccaaaacctctagatgagatcgggaaatgaataaaaggagtggtggcgg |
36521234 |
T |
|
| Q |
550 |
ggtctccatgccatgcatcagccatgagacactgtcgtttagttttctttctgaccattggattttttaaacatcaaaatccagtgatgacttcctcaat |
649 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
36521235 |
ggtctccatgccatgcatcagccatgagacactgtcgtttagttttctttctgaccattggatttgttaaacatcaaaatccagtgatgacttcctcaat |
36521334 |
T |
|
| Q |
650 |
gttgagcttgtttgcatgggccctacctcgtgcccttctggataaatgattaatttgaattttggatgtagtacactacaatgtttttaaggtaaactct |
749 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36521335 |
gttgagcttgcttgcatgggccctacctcgtgcccttctggataaatgattaattggaattttggatgtagtacactacaatgtttttaaggtaaactct |
36521434 |
T |
|
| Q |
750 |
ttagtaatgaaaagaattttatcagcttataagggtaaatattggacgtcattgtattcatattgtggtcactaataaattctttttcatcatcaaatag |
849 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36521435 |
ttagtaatgaaaagaattttatcagcttataagggtaaatattggtcgtcattgtattcatattgtggtcactaataaattctttttcatcatcaaatag |
36521534 |
T |
|
| Q |
850 |
tataccaaatgtatgacatggtaaaagaatgaaatcataatttttatcaagtacgaatcaaacacataatagaatttatatcataatatatatgcctatt |
949 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||| |
|
|
| T |
36521535 |
tataccaaatgtatgacatggtaaaagaatgaaatcataatttttatcaagtacgaatcaaacacataatataatttatatcata----atatgcctatt |
36521630 |
T |
|
| Q |
950 |
ctatctgcacaccaaac-agctttagagtttagttca |
985 |
Q |
| |
|
||||||||||||||||| |||||||| |||||||||| |
|
|
| T |
36521631 |
ctatctgcacaccaaacaagctttagtgtttagttca |
36521667 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 303; E-Value: 1e-170
Query Start/End: Original strand, 10 - 340
Target Start/End: Original strand, 36520278 - 36520608
Alignment:
| Q |
10 |
atcaatgttcaaagtgcatacatcaatttattttgaagttcaaagtaacaaccagatgaacattttaaaggacaattaaatcaaccagaatacactaaat |
109 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36520278 |
atcaatgttcaaagtgcatacatcaatttattttgaagttcaaagtaacaaccagatggacattttaaaggacaattaaatcaaccagaatacactaaat |
36520377 |
T |
|
| Q |
110 |
cagattccctaccagctctatcaacaaaccaccccatggcaccagtttgatttgagatatgattatcgaattataattcacaaccccgtcttaaaaaata |
209 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||| ||||||| |
|
|
| T |
36520378 |
cagattccctaccagctctatcaacaaaccaccccatggcaccattttgatttgagatatgattatcgaattataattcgcaaccccgtcttgaaaaata |
36520477 |
T |
|
| Q |
210 |
actttgttctgagccataagcaccaaacgacggttacctaaataagaacatgagttctcttcaaacacttacccaggaccaagttccatgcataacgaga |
309 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
36520478 |
actttgttctgagccataagcaccaaacgatggttacctaaataagaacaggagttctcttcaaacacttgcccaggaccaagttccatgcataacgaga |
36520577 |
T |
|
| Q |
310 |
tgtcaaacaccttcgttatggtttacacctt |
340 |
Q |
| |
|
||||||||||||||||||||||||||||||| |
|
|
| T |
36520578 |
tgtcaaacaccttcgttatggtttacacctt |
36520608 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 355 - 407
Target Start/End: Complemental strand, 6606310 - 6606255
Alignment:
| Q |
355 |
aaaattttgaggcttaaagcacttgcttgggt---ttggcccttaggtcggccctg |
407 |
Q |
| |
|
||||||||||||| |||||| ||||||||||| |||||||||||| |||||||| |
|
|
| T |
6606310 |
aaaattttgaggcctaaagcccttgcttgggtggcttggcccttaggccggccctg |
6606255 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 355 - 407
Target Start/End: Original strand, 13511161 - 13511216
Alignment:
| Q |
355 |
aaaattttgaggcttaaagcacttgcttgggt---ttggcccttaggtcggccctg |
407 |
Q |
| |
|
||||||||||||| |||||| ||||||||||| ||| ||||||||||||||||| |
|
|
| T |
13511161 |
aaaattttgaggcctaaagcccttgcttgggtggcttgacccttaggtcggccctg |
13511216 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 42; Significance: 0.00000000000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 347 - 407
Target Start/End: Original strand, 28430174 - 28430237
Alignment:
| Q |
347 |
tttcatccaaaattttgaggcttaaagcacttgcttgggt---ttggcccttaggtcggccctg |
407 |
Q |
| |
|
||||||||||||||||||||| |||||| ||||||||||| ||||||||||||||||||||| |
|
|
| T |
28430174 |
tttcatccaaaattttgaggcctaaagcccttgcttgggttgcttggcccttaggtcggccctg |
28430237 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 35; Significance: 0.0000000004; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 347 - 404
Target Start/End: Complemental strand, 27572510 - 27572450
Alignment:
| Q |
347 |
tttcatccaaaattttgaggcttaaagcacttgcttgggt---ttggcccttaggtcggcc |
404 |
Q |
| |
|
||||||||||||||||||||| |||||| ||||||||||| |||||||||||| ||||| |
|
|
| T |
27572510 |
tttcatccaaaattttgaggcctaaagcccttgcttgggttgcttggcccttaggccggcc |
27572450 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 34; Significance: 0.000000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 355 - 407
Target Start/End: Original strand, 8221831 - 8221886
Alignment:
| Q |
355 |
aaaattttgaggcttaaagcacttgcttgggt---ttggcccttaggtcggccctg |
407 |
Q |
| |
|
||||||||||||| |||||||||||||||||| |||||||||||| |||||||| |
|
|
| T |
8221831 |
aaaattttgaggcctaaagcacttgcttgggttgcttggcccttaggccggccctg |
8221886 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 33; Significance: 0.000000006; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 347 - 406
Target Start/End: Original strand, 7738950 - 7739012
Alignment:
| Q |
347 |
tttcatccaaaattttgaggcttaaagcacttgcttgg---gtttggcccttaggtcggccct |
406 |
Q |
| |
|
||||| |||||||||||||||||||||| ||||||| | | |||||||||||||||||||| |
|
|
| T |
7738950 |
tttcacccaaaattttgaggcttaaagcccttgctttgattgcttggcccttaggtcggccct |
7739012 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 33; Significance: 0.000000006; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 347 - 387
Target Start/End: Original strand, 2603933 - 2603973
Alignment:
| Q |
347 |
tttcatccaaaattttgaggcttaaagcacttgcttgggtt |
387 |
Q |
| |
|
||||| |||||||||||||||||||||| |||||||||||| |
|
|
| T |
2603933 |
tttcacccaaaattttgaggcttaaagcccttgcttgggtt |
2603973 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University