View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5490-Insertion-4 (Length: 938)

Name: NF5490-Insertion-4
Description: NF5490
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5490-Insertion-4
NF5490-Insertion-4
[»] chr4 (20 HSPs)
chr4 (8-637)||(35036075-35036715)
chr4 (13-555)||(35019881-35020429)
chr4 (749-937)||(35036914-35037106)
chr4 (13-281)||(35029973-35030244)
chr4 (304-434)||(35044514-35044644)
chr4 (841-938)||(55272374-55272473)
chr4 (841-938)||(711963-712062)
chr4 (841-938)||(17619150-17619249)
chr4 (841-938)||(46827704-46827803)
chr4 (10-134)||(35044238-35044362)
chr4 (841-938)||(32728360-32728459)
chr4 (629-739)||(35036729-35036845)
chr4 (841-909)||(960898-960967)
chr4 (841-909)||(3756274-3756343)
chr4 (184-236)||(35044382-35044434)
chr4 (844-938)||(48435577-48435673)
chr4 (841-938)||(38851516-38851615)
chr4 (766-804)||(35037203-35037241)
chr4 (841-920)||(41878409-41878490)
chr4 (841-909)||(49229692-49229761)
[»] chr3 (11 HSPs)
chr3 (841-938)||(9434127-9434226)
chr3 (841-938)||(10457890-10457989)
chr3 (841-938)||(25996271-25996370)
chr3 (841-938)||(51757596-51757695)
chr3 (841-938)||(4190263-4190362)
chr3 (841-938)||(34791832-34791931)
chr3 (841-938)||(52627975-52628074)
chr3 (841-920)||(53581874-53581955)
chr3 (841-920)||(24688418-24688499)
chr3 (841-936)||(42100691-42100788)
chr3 (841-920)||(42394435-42394516)
[»] chr8 (10 HSPs)
chr8 (841-938)||(35181519-35181618)
chr8 (841-938)||(34304791-34304890)
chr8 (841-938)||(18066716-18066815)
chr8 (841-938)||(16603624-16603723)
chr8 (841-938)||(33629991-33630090)
chr8 (836-938)||(16358831-16358936)
chr8 (891-938)||(10678150-10678198)
chr8 (841-920)||(2546999-2547080)
chr8 (637-670)||(10096135-10096168)
chr8 (841-920)||(26125638-26125719)
[»] chr7 (9 HSPs)
chr7 (841-938)||(31408631-31408730)
chr7 (841-938)||(31513290-31513389)
chr7 (841-938)||(40236922-40237021)
chr7 (841-938)||(27535229-27535328)
chr7 (841-938)||(33384873-33384973)
chr7 (841-935)||(9216305-9216400)
chr7 (841-920)||(5015398-5015479)
chr7 (841-935)||(4638200-4638296)
chr7 (841-920)||(35069724-35069805)
[»] chr5 (7 HSPs)
chr5 (841-938)||(17208077-17208176)
chr5 (841-938)||(32473392-32473491)
chr5 (841-938)||(30622717-30622815)
chr5 (841-920)||(7617136-7617217)
chr5 (841-920)||(22512308-22512389)
chr5 (841-920)||(18033985-18034066)
chr5 (841-909)||(38470582-38470651)
[»] chr2 (16 HSPs)
chr2 (841-938)||(43114560-43114659)
chr2 (841-938)||(11825652-11825751)
chr2 (841-938)||(16803971-16804070)
chr2 (841-938)||(16843253-16843352)
chr2 (841-938)||(18491708-18491807)
chr2 (841-938)||(41281972-41282071)
chr2 (841-938)||(966832-966931)
chr2 (841-938)||(12415458-12415557)
chr2 (841-938)||(12427518-12427617)
chr2 (841-920)||(6518485-6518565)
chr2 (841-920)||(4299436-4299517)
chr2 (836-938)||(34895739-34895844)
chr2 (853-938)||(14285691-14285778)
chr2 (875-938)||(4451948-4452013)
chr2 (645-674)||(13294249-13294278)
chr2 (841-920)||(19047160-19047241)
[»] chr1 (14 HSPs)
chr1 (841-938)||(44112680-44112779)
chr1 (841-938)||(48119631-48119730)
chr1 (841-938)||(35003297-35003396)
chr1 (841-938)||(38335921-38336020)
chr1 (841-938)||(38113193-38113292)
chr1 (841-938)||(45427743-45427842)
chr1 (841-938)||(45639730-45639829)
chr1 (841-938)||(45705828-45705927)
chr1 (841-938)||(46168386-46168485)
chr1 (841-937)||(41065156-41065254)
chr1 (841-938)||(26585465-26585564)
chr1 (841-938)||(35000111-35000210)
chr1 (841-894)||(14427350-14427404)
chr1 (841-920)||(48498978-48499059)
[»] scaffold0003 (1 HSPs)
scaffold0003 (841-938)||(45717-45816)
[»] chr6 (5 HSPs)
chr6 (841-938)||(27441545-27441644)
chr6 (841-938)||(33242406-33242505)
chr6 (841-920)||(33253916-33253997)
chr6 (637-674)||(11529644-11529681)
chr6 (841-920)||(24204003-24204084)
[»] scaffold0100 (1 HSPs)
scaffold0100 (841-938)||(35454-35553)
[»] scaffold0038 (1 HSPs)
scaffold0038 (841-920)||(112658-112739)


Alignment Details
Target: chr4 (Bit Score: 547; Significance: 0; HSPs: 20)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 547; E-Value: 0
Query Start/End: Original strand, 8 - 637
Target Start/End: Original strand, 35036075 - 35036715
Alignment:
Q  8 cctacggttcttattggcgtacattgcgtaagatcgccactgtccacgtcctatcagctcaacgaatagatatgcttaaacatgttatggaatctgaggt 107  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  35036075 cctacggttcttattggcgtacattgcgtaagatcgccactgtccacgtcctctcagctcaacgaatagatatgcttaaacatgttatggaatctgaggt 35036174  T
Q  108 gaagaaagctatgaaagatagttactcattttggctaaagatgaagaatgatggtaactctgaaagagctattacggaaatgaaaaaatggtttggtgat 207  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35036175 gaagaaagctatgaaagatagttactcattttggctaaggatgaagaatgatggtaactctgaaagagctattacggaaatgaaaaaatggtttggtgat 35036274  T
Q  208 atagcgatgaacgttatgtgtagaacggtaacggggaaagtttttgatggtgacgaagaagagaatcaaaggattag------------ggactttttcg 295  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||            |||||||||||    
T  35036275 atagcgatgaacgttatgtgtagaacggtaacggggaaagtttttgatggtgacgaagaagagaatcagaggattagaaaatcctttagggactttttcg 35036374  T
Q  296 atctcagcggttcatttgttatatctgacatgttgcggtttttgagatggttggatttggatggaaaacagaagcagatgaagaaaacggctaaagagtt 395  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35036375 atctcagcggttcatttgttatatctgacatgttgcggttttttagatggttggatttggatggaaaacagaagcagatgaagaaaacggctaaagagtt 35036474  T
Q  396 agatgattttgttcaagtttggctcgatcaacacaaacgcaacaagaaacctgccggcaccaaacttgacttcatggatgtgctcctttcaaccgttgat 495  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35036475 agatgattttgttcaagtttggctcgatcaacacaaacgcaacaagaaacctgccggcaccaaacttgacttcatggatgtgctcctttcaaccgttgat 35036574  T
Q  496 gatcaaaatatagatggtcgtgatgctgacaccacaatcaaagccacttgtctggtatgttagtttactcccacccaaaaacataaagcaagtaattgaa 595  Q
    |||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  35036575 gatcaagatatagatggtcgtgatgctgacaccacaatcaaagcaacttgtctggtatgttagtttactcccacccaaaaacataaagcgagtaattgaa 35036674  T
Q  596 tccacttccacttgnnnnnnnactgaaaaaactcacttttta 637  Q
    ||||||||||||||       |||||||||||||||||||||    
T  35036675 tccacttccacttg-tttttaactgaaaaaactcacttttta 35036715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 188; E-Value: 1e-101
Query Start/End: Original strand, 13 - 555
Target Start/End: Original strand, 35019881 - 35020429
Alignment:
Q  13 ggttcttattggcgtacattgcgtaagatcgccactgtccacgtcctatcagctcaacgaatagatatgcttaaacatgttatggaatctgaggtgaaga 112  Q
    |||||||||||||||||  ||||||| || |||||||| || ||||| ||||||||||| |||||||||||||||||||| |||||||||||||||||      
T  35019881 ggttcttattggcgtaccgtgcgtaaaattgccactgttcatgtcctctcagctcaacggatagatatgcttaaacatgtaatggaatctgaggtgaaag 35019980  T
Q  113 aagctatgaaagatagttactcattttggctaaagatgaagaatgatggtaactctgaaagagctattacggaaatgaaaaaatggtttggtgatatagc 212  Q
    ||||||||||||| ||||| ||||||||| |||||||||||||||| |||||||||||||| |   |||||||||||||| |||||||||  || |||||    
T  35019981 aagctatgaaagagagttattcattttggttaaagatgaagaatgagggtaactctgaaagggtatttacggaaatgaaagaatggtttgcagacatagc 35020080  T
Q  213 gatgaacgttatgtgtagaacggtaacggggaaagtttttgatggtgacgaagaagagaatcaaag------------gattagggactttttcgatctc 300  Q
    ||| |||||| | | ||| || |||| ||| |||  |||||||||||| || ||||||||||||||            |||||| || |||||  ||||     
T  35020081 gattaacgttgtttttaggacagtaatgggaaaacgttttgatggtgatgaggaagagaatcaaaggataagaaaaatgattagagatttttttaatctt 35020180  T
Q  301 agcggttcatttgttatatctgacatgttgcggtttttgagatggttggatttggatggaaaacagaagcagatgaagaaaacggctaaagagttagatg 400  Q
    || |||||||||||| | ||||||||||| | || |||||||||||||||||||||||||||||||||||| ||||||||||| || |||||||||||||    
T  35020181 agtggttcatttgttgtttctgacatgttaccgtatttgagatggttggatttggatggaaaacagaagcaaatgaagaaaacagcaaaagagttagatg 35020280  T
Q  401 attttgttcaagtttggctcgatcaacacaaacgcaacaagaaacct-gccggcaccaaacttgacttcatggatgtgctcctttcaaccgttgatgatc 499  Q
    | ||||||   |||||||| ||||| |||||||  || |||||  || | ||  | |||    || |||||||||||||| ||||||||||||||||       
T  35020281 actttgtttgtgtttggcttgatcagcacaaacataagaagaattctggtcgtgaacaa----gatttcatggatgtgctgctttcaaccgttgatg--- 35020373  T
Q  500 aaaatatagatggtcgtgatgctgacaccacaatcaaagccacttgtctggtatgt 555  Q
    || || ||||||| ||||||||||| || |||||||||||||||||| ||||||||    
T  35020374 aagatttagatggccgtgatgctgatactacaatcaaagccacttgtatggtatgt 35020429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 142; E-Value: 5e-74
Query Start/End: Original strand, 749 - 937
Target Start/End: Original strand, 35036914 - 35037106
Alignment:
Q  749 agctgccactactagagaaaatacacgaatatagagaaaatacctcaatagctaaatccaattttcaaactattcacaataattttcaaagg--aaatgt 846  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |  ||||||    
T  35036914 agctgccactactagagaaaatacacgaatatagagaaaatacctcaatagctaaatccaattttcaaactattcacaataattttcaaaagaaaaatgt 35037013  T
Q  847 tacatgaacactctttaaccatacactctattgtaca-cccatgcattaaggacattttggt-aattcatctcacagccatattttctctttc 937  Q
    ||||||| ||| ||||||||||||||||||||||||| ||||||||||||||| |||||||| ||||||||||||| ||||||||| ||||||    
T  35037014 tacatgagcaccctttaaccatacactctattgtacaccccatgcattaaggatattttggtaaattcatctcacaaccatattttttctttc 35037106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 110; E-Value: 6e-55
Query Start/End: Original strand, 13 - 281
Target Start/End: Original strand, 35029973 - 35030244
Alignment:
Q  13 ggttcttattggcgtacattgcgtaagatcgccactgtccacgtcctatcagctcaacgaatagatatgcttaaacatgttatggaatctgaggtgaaga 112  Q
    |||||||||||||||||| ||||||| |||||||| ||||| ||||| ||||||||||| |||||||||||||||||||| ||||||||||||||| |      
T  35029973 ggttcttattggcgtacagtgcgtaaaatcgccaccgtccatgtcctctcagctcaacggatagatatgcttaaacatgtaatggaatctgaggtggaag 35030072  T
Q  113 aagctatgaaagatagttactcattttggctaaagatgaaga---atgatggtaactctgaaagagctattacggaaatgaaaaaatggtttggtgatat 209  Q
    ||||||||||||| ||||| ||||||||| | ||||||||||   |  | |||||||||||||| |   |||||||||||||| |||||||||  || ||    
T  35030073 aagctatgaaagagagttattcattttggttgaagatgaagagcgagcagggtaactctgaaagggtatttacggaaatgaaagaatggtttgcagacat 35030172  T
Q  210 agcgatgaacgttatgtgtagaacggtaacggggaaagtttttgatggtgacgaagaagagaatcaaaggat 281  Q
    |||||| |||||| | | ||| || |||| ||| |||  |||||||||||| || |||||||||||||||||    
T  35030173 agcgattaacgttgtttttaggacagtaatgggaaaacgttttgatggtgatgaggaagagaatcaaaggat 35030244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 71; E-Value: 1e-31
Query Start/End: Original strand, 304 - 434
Target Start/End: Original strand, 35044514 - 35044644
Alignment:
Q  304 ggttcatttgttatatctgacatgttgcggtttttgagatggttggatttggatggaaaacagaagcagatgaagaaaacggctaaagagttagatgatt 403  Q
    ||||| ||||||||||||||   ||||| |||||| |||||||||||||||||||||||| ||||| | ||||||||||| ||||||||||| ||||| |    
T  35044514 ggttcctttgttatatctgattcgttgccgtttttaagatggttggatttggatggaaaagagaaggaaatgaagaaaactgctaaagagttggatgagt 35044613  T
Q  404 ttgttcaagtttggctcgatcaacacaaacg 434  Q
    ||||||||| |||| | ||||||||||||||    
T  35044614 ttgttcaaggttggattgatcaacacaaacg 35044644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 60; E-Value: 4e-25
Query Start/End: Original strand, 841 - 938
Target Start/End: Complemental strand, 55272473 - 55272374
Alignment:
Q  841 aaatgttacatgaacactctttaaccatacactctattgtaca-cccatgcattaaggacattttggt-aattcatctcacagccatattttctctttca 938  Q
    ||||||||||||||||  |||||| |||||||||||||||||| ||||||||||||||| |||||||| ||||||||||||| ||||| |||||||||||    
T  55272473 aaatgttacatgaacatcctttaatcatacactctattgtacaccccatgcattaaggatattttggtaaattcatctcacaaccatactttctctttca 55272374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 56; E-Value: 1e-22
Query Start/End: Original strand, 841 - 938
Target Start/End: Original strand, 711963 - 712062
Alignment:
Q  841 aaatgttacatgaacactctttaaccatacactctattgtacaccc-atgcattaaggacattttggt-aattcatctcacagccatattttctctttca 938  Q
    ||||||||||||||||| |||||| ||||||| ||||||||||||| |||||||||||| |||||||| |||||||||||||  |||| |||||||||||    
T  711963 aaatgttacatgaacaccctttaatcatacaccctattgtacaccctatgcattaaggatattttggtaaattcatctcacaaacatactttctctttca 712062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 56; E-Value: 1e-22
Query Start/End: Original strand, 841 - 938
Target Start/End: Complemental strand, 17619249 - 17619150
Alignment:
Q  841 aaatgttacatgaacactctttaaccatacactctattgtaca-cccatgcattaaggacattttggt-aattcatctcacagccatattttctctttca 938  Q
    |||||||||||||||||  ||||| ||||||| |||||||||| ||||||||||||||| |||||||| ||||||||||||| ||||| |||||||||||    
T  17619249 aaatgttacatgaacaccttttaatcatacaccctattgtacaccccatgcattaaggatattttggtaaattcatctcacaaccatactttctctttca 17619150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 56; E-Value: 1e-22
Query Start/End: Original strand, 841 - 938
Target Start/End: Complemental strand, 46827803 - 46827704
Alignment:
Q  841 aaatgttacatgaacactctttaaccatacactctattgtacaccc-atgcattaaggacattttggt-aattcatctcacagccatattttctctttca 938  Q
    ||||||||||||||||| |||||| ||||||||||||||||||||| |||||||||| || ||||||| |||| ||||||||  ||||||||||||||||    
T  46827803 aaatgttacatgaacaccctttaatcatacactctattgtacacccaatgcattaagaacgttttggtaaatttatctcacaaacatattttctctttca 46827704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 53; E-Value: 6e-21
Query Start/End: Original strand, 10 - 134
Target Start/End: Original strand, 35044238 - 35044362
Alignment:
Q  10 tacggttcttattggcgtacattgcgtaagatcgccactgtccacgtcctatcagctcaacgaatagatatgcttaaacatgttatggaatctgaggtga 109  Q
    |||||||| |||||||| ||| ||||||||||  ||||  |||||||||| || ||   ||| ||||||||||||||||||||||||||| ||||||| |    
T  35044238 tacggttcctattggcgcacagtgcgtaagatatccaccatccacgtcctctccgccacacggatagatatgcttaaacatgttatggaaactgaggtta 35044337  T
Q  110 agaaagctatgaaagatagttactc 134  Q
    |||| || |||||||||||| ||||    
T  35044338 agaatgcgatgaaagatagtcactc 35044362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 52; E-Value: 3e-20
Query Start/End: Original strand, 841 - 938
Target Start/End: Original strand, 32728360 - 32728459
Alignment:
Q  841 aaatgttacatgaacactctttaaccatacactctattgtaca-cccatgcattaaggacattttggt-aattcatctcacagccatattttctctttca 938  Q
    ||||||||||||||||  |||||| ||||||| |||||||||| ||||||||||||||||||||| || |||||||||||||  |||| |||||||||||    
T  32728360 aaatgttacatgaacatcctttaatcatacaccctattgtacaccccatgcattaaggacattttagtaaattcatctcacaatcatactttctctttca 32728459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 52; E-Value: 3e-20
Query Start/End: Original strand, 629 - 739
Target Start/End: Original strand, 35036729 - 35036845
Alignment:
Q  629 cactttttaattgcagggtaattttgtaagtttcatttaattaactnnnnnnnctaaaatcccttttcaatgt-at-----tattaagctaacaactaat 722  Q
    |||||||| |||||||||||||||||||||||||||||||||||||       | |||||| ||||||||| | ||     |||||||||||||||||||    
T  35036729 cactttttgattgcagggtaattttgtaagtttcatttaattaactaaaaaaacaaaaatctcttttcaatatcatggatgtattaagctaacaactaat 35036828  T
Q  723 ataatttcatactagta 739  Q
    |||||||||||||||||    
T  35036829 ataatttcatactagta 35036845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 46; E-Value: 1e-16
Query Start/End: Original strand, 841 - 909
Target Start/End: Complemental strand, 960967 - 960898
Alignment:
Q  841 aaatgttacatgaacactctttaaccatacactctattgtacaccc-atgcattaaggacattttggtaa 909  Q
    ||||||||||||||||| |||||| ||||||||||||||||||||| || ||||| ||||||||||||||    
T  960967 aaatgttacatgaacaccctttaatcatacactctattgtacaccctatacattagggacattttggtaa 960898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 841 - 909
Target Start/End: Complemental strand, 3756343 - 3756274
Alignment:
Q  841 aaatgttacatgaacactctttaaccatacactctattgtaca-cccatgcattaaggacattttggtaa 909  Q
    ||||||||||||||||| |||||| ||||||| |||||||||| ||||||||||||||| ||||| ||||    
T  3756343 aaatgttacatgaacaccctttaatcatacaccctattgtacaccccatgcattaaggatattttagtaa 3756274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 184 - 236
Target Start/End: Original strand, 35044382 - 35044434
Alignment:
Q  184 gaaatgaaaaaatggtttggtgatatagcgatgaacgttatgtgtagaacggt 236  Q
    |||||||| ||||||||||||||||||||||| ||||| |||| |||||||||    
T  35044382 gaaatgaagaaatggtttggtgatatagcgataaacgtgatgtttagaacggt 35044434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 844 - 938
Target Start/End: Complemental strand, 48435673 - 48435577
Alignment:
Q  844 tgttacatgaacactctttaaccatacactctattgtaca-cccatgcattaaggacattttggt-aattcatctcacagccatattttctctttca 938  Q
    ||||||||||||||  ||||| || |||| |||||||||| ||||||||||| |||||| ||||| |||||||||||||  |||| ||| |||||||    
T  48435673 tgttacatgaacaccatttaatcacacaccctattgtacaccccatgcattagggacatattggtaaattcatctcacaatcatactttatctttca 48435577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 841 - 938
Target Start/End: Original strand, 38851516 - 38851615
Alignment:
Q  841 aaatgttacatgaacactctttaaccatacactctattgtacac-ccatgcattaaggacattttggtaa-ttcatctcacagccatattttctctttca 938  Q
    |||||||||||||| |  |||||| ||||||   || ||||||| |||||||||| |||||||||| ||| ||||||||||| ||||| |||||||||||    
T  38851516 aaatgttacatgaatatcctttaatcatacatcataatgtacactccatgcattatggacattttgataaattcatctcacaaccatactttctctttca 38851615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 766 - 804
Target Start/End: Original strand, 35037203 - 35037241
Alignment:
Q  766 aaaatacacgaatatagagaaaatacctcaatagctaaa 804  Q
    ||||| ||||| |||||||||||||||||||||||||||    
T  35037203 aaaattcacgagtatagagaaaatacctcaatagctaaa 35037241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 841 - 920
Target Start/End: Original strand, 41878409 - 41878490
Alignment:
Q  841 aaatgttacatgaacactctttaaccatacactctattgtacaccc-atgcattaaggacattttggtaa-ttcatctcaca 920  Q
    |||||||||||||||||||||||  |||||||   ||||||||||| || ||||| ||| |||||| ||| |||||||||||    
T  41878409 aaatgttacatgaacactctttattcatacacctcattgtacaccctatccattagggatattttgataagttcatctcaca 41878490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 841 - 909
Target Start/End: Complemental strand, 49229761 - 49229692
Alignment:
Q  841 aaatgttacatgaacactctttaaccatacactctattgtacac-ccatgcattaaggacattttggtaa 909  Q
    |||||||| |||||||  |||||| ||||||| |||||||||||  ||||||||||||| ||| ||||||    
T  49229761 aaatgttatatgaacatcctttaatcatacaccctattgtacacttcatgcattaaggatattctggtaa 49229692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 64; Significance: 2e-27; HSPs: 11)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 64; E-Value: 2e-27
Query Start/End: Original strand, 841 - 938
Target Start/End: Original strand, 9434127 - 9434226
Alignment:
Q  841 aaatgttacatgaacactctttaaccatacactctattgtaca-cccatgcattaaggacattttggtaa-ttcatctcacagccatattttctctttca 938  Q
    ||||||||||||||||| |||||| |||||||||||||||||| ||||||||||| |||||||||||||| ||||||||||| ||||| |||||||||||    
T  9434127 aaatgttacatgaacaccctttaatcatacactctattgtacaccccatgcattagggacattttggtaatttcatctcacaaccatactttctctttca 9434226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 52; E-Value: 3e-20
Query Start/End: Original strand, 841 - 938
Target Start/End: Complemental strand, 10457989 - 10457890
Alignment:
Q  841 aaatgttacatgaacactctttaaccatacactctattgtaca-cccatgcattaaggacattttggt-aattcatctcacagccatattttctctttca 938  Q
    |||||||||||||||||  ||||| ||||||| |||||||||| ||||||||||||||| |||||||| |||| |||||||| ||||| |||||||||||    
T  10457989 aaatgttacatgaacaccttttaatcatacaccctattgtacaccccatgcattaaggatattttggtaaatttatctcacaaccatactttctctttca 10457890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 52; E-Value: 3e-20
Query Start/End: Original strand, 841 - 938
Target Start/End: Original strand, 25996271 - 25996370
Alignment:
Q  841 aaatgttacatgaacactctttaaccatacactctattgtacaccc-atgcattaaggacattttggtaa-ttcatctcacagccatattttctctttca 938  Q
    ||||||||||||||||| |||||| ||||||   |||||||||||| ||  ||||||||||||||||||| ||||||||||| |||||||||||||||||    
T  25996271 aaatgttacatgaacaccctttaatcatacatcttattgtacaccccatatattaaggacattttggtaaattcatctcacaaccatattttctctttca 25996370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 48; E-Value: 6e-18
Query Start/End: Original strand, 841 - 938
Target Start/End: Original strand, 51757596 - 51757695
Alignment:
Q  841 aaatgttacatgaacactctttaaccatacactctattgtacacc-catgcattaaggacattttggtaa-ttcatctcacagccatattttctctttca 938  Q
    |||| |||||| ||||| |||||| ||||||| |||||||||||| ||||||||| ||||||||| |||| ||||||||||| ||||| |||||||||||    
T  51757596 aaatattacataaacaccctttaatcatacaccctattgtacacctcatgcattatggacattttagtaatttcatctcacaaccatactttctctttca 51757695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 841 - 938
Target Start/End: Complemental strand, 4190362 - 4190263
Alignment:
Q  841 aaatgttacatgaacactctttaaccatacactctattgtacacc-catgcattaaggacattttggt-aattcatctcacagccatattttctctttca 938  Q
    ||||||||||||||||| |||||| ||||||| ||||||||||||  ||| ||||  || |||||||| ||||||||||||| ||||| |||||||||||    
T  4190362 aaatgttacatgaacaccctttaatcatacaccctattgtacaccttatgtattagagatattttggtaaattcatctcacaaccatactttctctttca 4190263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 841 - 938
Target Start/End: Original strand, 34791832 - 34791931
Alignment:
Q  841 aaatgttacatgaacactctttaaccatacactctattgtacacc-catgcattaaggacattttggtaa-ttcatctcacagccatattttctctttca 938  Q
    ||||||||||||||||| |||||| |||||||  ||||||| ||| ||||||||| |||||||||  ||| ||||||||||| ||||| |||||||||||    
T  34791832 aaatgttacatgaacaccctttaatcatacaccatattgtaaacctcatgcattagggacattttaataatttcatctcacaaccatactttctctttca 34791931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 841 - 938
Target Start/End: Complemental strand, 52628074 - 52627975
Alignment:
Q  841 aaatgttacatgaacactctttaaccatacactctattgtacacc-catgcattaaggacattttggt-aattcatctcacagccatattttctctttca 938  Q
    ||||||||| ||||||| |||||| ||||||  |||||||||||| ||||||||||| | |||||||| |||||||||||||  |||| |||||||||||    
T  52628074 aaatgttacgtgaacaccctttaatcatacatcctattgtacacctcatgcattaagtatattttggtaaattcatctcacaatcatactttctctttca 52627975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 841 - 920
Target Start/End: Complemental strand, 53581955 - 53581874
Alignment:
Q  841 aaatgttacatgaacactctttaaccatacactctattgtaca-cccatgcattaaggacattttggtaa-ttcatctcaca 920  Q
    |||||||||||||||||||||||  ||||||||| |||||||| || ||| |||| ||| |||||| ||| |||||||||||    
T  53581955 aaatgttacatgaacactctttattcatacactccattgtacatcctatgtattagggatattttgataagttcatctcaca 53581874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 841 - 920
Target Start/End: Complemental strand, 24688499 - 24688418
Alignment:
Q  841 aaatgttacatgaacactctttaaccatacactctattgtacaccc-atgcattaaggacattttggtaa-ttcatctcaca 920  Q
    ||||||||||||||||| |||||    ||||||| ||||||||||| ||| |||| ||| |||||||||| |||||||||||    
T  24688499 aaatgttacatgaacaccctttatttctacactccattgtacaccctatgtattagggatattttggtaagttcatctcaca 24688418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 841 - 936
Target Start/End: Original strand, 42100691 - 42100788
Alignment:
Q  841 aaatgttacatgaacactctttaaccatacactctattgtaca-cccatgcattaaggacattttggtaa-ttcatctcacagccatattttctcttt 936  Q
    ||||||||||||||||| |||||  | |||||   |||||||| |||||| |||| ||| |||||||||| ||||||||||| ||| ||||| |||||    
T  42100691 aaatgttacatgaacaccctttattcctacacctcattgtacaccccatgtattagggatattttggtaagttcatctcacaaccacattttatcttt 42100788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 841 - 920
Target Start/End: Complemental strand, 42394516 - 42394435
Alignment:
Q  841 aaatgttacatgaacactctttaaccatacactctattgtacaccc-atgcattaaggacattttggtaa-ttcatctcaca 920  Q
    ||||||||||||||||| |||||  | |||| || ||||||||||| ||| |||| ||| |||||||||| |||||||||||    
T  42394516 aaatgttacatgaacaccctttattcctacattccattgtacaccctatgtattagggatattttggtaagttcatctcaca 42394435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 60; Significance: 4e-25; HSPs: 10)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 60; E-Value: 4e-25
Query Start/End: Original strand, 841 - 938
Target Start/End: Original strand, 35181519 - 35181618
Alignment:
Q  841 aaatgttacatgaacactctttaaccatacactctattgtaca-cccatgcattaaggacattttggtaa-ttcatctcacagccatattttctctttca 938  Q
    ||||||||||||||||| |||||| ||||||| |||||||||| ||||||||||| |||||||||||||| ||||||||||| ||||| |||||||||||    
T  35181519 aaatgttacatgaacaccctttaatcatacaccctattgtacaccccatgcattagggacattttggtaatttcatctcacaaccatactttctctttca 35181618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 56; E-Value: 1e-22
Query Start/End: Original strand, 841 - 938
Target Start/End: Original strand, 34304791 - 34304890
Alignment:
Q  841 aaatgttacatgaacactctttaaccatacactctattgtaca-cccatgcattaaggacattttggtaa-ttcatctcacagccatattttctctttca 938  Q
    ||||||||||||||||  |||||| ||||||| |||||||||| ||||||||||| |||||||||||||| ||||||||||| ||||| |||||||||||    
T  34304791 aaatgttacatgaacatcctttaatcatacaccctattgtacaccccatgcattagggacattttggtaatttcatctcacaaccatactttctctttca 34304890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 48; E-Value: 6e-18
Query Start/End: Original strand, 841 - 938
Target Start/End: Complemental strand, 18066815 - 18066716
Alignment:
Q  841 aaatgttacatgaacactctttaaccatacactctattgtaca-cccatgcattaaggacattttggtaa-ttcatctcacagccatattttctctttca 938  Q
    ||||||||||||||||| |||||| |||||| ||||||||||| |||||| |||| ||| ||||| |||| ||||||||||| ||||| |||||||||||    
T  18066815 aaatgttacatgaacaccctttaatcatacattctattgtacatcccatgtattagggatattttagtaatttcatctcacaaccatactttctctttca 18066716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 841 - 938
Target Start/End: Complemental strand, 16603723 - 16603624
Alignment:
Q  841 aaatgttacatgaacactctttaaccatacactctattgtacaccc-atgcattaaggacattttggt-aattcatctcacagccatattttctctttca 938  Q
    |||||||||||| |||| |||||| |||||||  |||| ||||||| ||||||||| ||||||||||| ||||||||||||| ||||| || ||||||||    
T  16603723 aaatgttacatgcacaccctttaatcatacaccttattatacaccccatgcattaaagacattttggtaaattcatctcacaaccatacttactctttca 16603624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 841 - 938
Target Start/End: Complemental strand, 33630090 - 33629991
Alignment:
Q  841 aaatgttacatgaacactctttaaccatacactctattgtacaccc-atgcattaaggacattttggtaa-ttcatctcacagccatattttctctttca 938  Q
    |||||||||| |||||| |||||| |||||||   ||||||||||| |||||||| ||||||||| |||| ||||||||||| | ||| |||||||||||    
T  33630090 aaatgttacacgaacaccctttaatcatacacctcattgtacaccctatgcattagggacattttagtaatttcatctcacaactatactttctctttca 33629991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 836 - 938
Target Start/End: Complemental strand, 16358936 - 16358831
Alignment:
Q  836 aaaggaaatgttacat-gaacactctttaaccatacactctattgtaca-cccatgcattaaggacattttggtaa-ttcatctcacagccatattttct 932  Q
    |||| ||||||||||| ||| || |||||| ||||||| |||||||||| ||||||||||||| | |||||| ||| ||||||||||| ||||| |||||    
T  16358936 aaagaaaatgttacattgaagaccctttaatcatacaccctattgtacatcccatgcattaagaatattttgataaattcatctcacaaccatactttct 16358837  T
Q  933 ctttca 938  Q
     |||||    
T  16358836 ttttca 16358831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 891 - 938
Target Start/End: Complemental strand, 10678198 - 10678150
Alignment:
Q  891 attaaggacattttggtaa-ttcatctcacagccatattttctctttca 938  Q
    ||||||||||||||||||| ||||||||||| ||||| |||||||||||    
T  10678198 attaaggacattttggtaaattcatctcacaaccatactttctctttca 10678150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 841 - 920
Target Start/End: Original strand, 2546999 - 2547080
Alignment:
Q  841 aaatgttacatgaacactctttaaccatacactctattgtacacc-catgcattaaggacattttggtaa-ttcatctcaca 920  Q
    |||||||||||||||||||||||    ||||||| |||||||||| |||| |||| ||| ||||| |||| |||||||||||    
T  2546999 aaatgttacatgaacactctttatttctacactccattgtacacctcatgtattagggatattttagtaagttcatctcaca 2547080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 637 - 670
Target Start/End: Original strand, 10096135 - 10096168
Alignment:
Q  637 aattgcagggtaattttgtaagtttcatttaatt 670  Q
    ||||| ||||||||||||||||||||||||||||    
T  10096135 aattgaagggtaattttgtaagtttcatttaatt 10096168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 841 - 920
Target Start/End: Original strand, 26125638 - 26125719
Alignment:
Q  841 aaatgttacatgaacactctttaaccatacactctattgtacaccc-atgcattaaggacattttggtaa-ttcatctcaca 920  Q
    ||||||||||| ||||| |||||  |||||| || ||||||||||| ||| |||| ||| |||||||||| |||||||||||    
T  26125638 aaatgttacataaacaccctttattcatacattccattgtacaccctatgtattagggatattttggtaagttcatctcaca 26125719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 60; Significance: 4e-25; HSPs: 9)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 60; E-Value: 4e-25
Query Start/End: Original strand, 841 - 938
Target Start/End: Complemental strand, 31408730 - 31408631
Alignment:
Q  841 aaatgttacatgaacactctttaaccatacactctattgtaca-cccatgcattaaggacattttggt-aattcatctcacagccatattttctctttca 938  Q
    ||||||||||||||||| |||||| |||||||||||||||||| ||||||||||||||| |||||||| ||||||| ||||| ||||| |||||||||||    
T  31408730 aaatgttacatgaacaccctttaatcatacactctattgtacatcccatgcattaaggatattttggtaaattcatttcacaaccatactttctctttca 31408631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 60; E-Value: 4e-25
Query Start/End: Original strand, 841 - 938
Target Start/End: Original strand, 31513290 - 31513389
Alignment:
Q  841 aaatgttacatgaacactctttaaccatacactctattgtaca-cccatgcattaaggacattttggt-aattcatctcacagccatattttctctttca 938  Q
    |||||||||||||||||||||||| ||||||| |||||||| | ||||||||||||||| |||||||| ||||||||||||| ||||| |||||||||||    
T  31513290 aaatgttacatgaacactctttaatcatacaccctattgtataccccatgcattaaggatattttggtaaattcatctcacaaccatactttctctttca 31513389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 60; E-Value: 4e-25
Query Start/End: Original strand, 841 - 938
Target Start/End: Original strand, 40236922 - 40237021
Alignment:
Q  841 aaatgttacatgaacactctttaaccatacactctattgtaca-cccatgcattaaggacattttggtaa-ttcatctcacagccatattttctctttca 938  Q
    ||||||||||||||||| |||||| ||||||  |||||||||| ||||||||||| |||||||||||||| ||||||||||| |||||||||||||||||    
T  40236922 aaatgttacatgaacaccctttaatcatacatcctattgtacaccccatgcattagggacattttggtaatttcatctcacaaccatattttctctttca 40237021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 52; E-Value: 3e-20
Query Start/End: Original strand, 841 - 938
Target Start/End: Complemental strand, 27535328 - 27535229
Alignment:
Q  841 aaatgttacatgaacactctttaaccatacactctattgtacac-ccatgcattaaggacattttggtaa-ttcatctcacagccatattttctctttca 938  Q
    ||||||||||||||||| |||||| ||||||||||||||||||| |||||  |||| ||||||||||||| ||||||||||| | ||| |||||||||||    
T  27535328 aaatgttacatgaacaccctttaatcatacactctattgtacactccatgtgttaaagacattttggtaatttcatctcacaactatactttctctttca 27535229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 841 - 938
Target Start/End: Original strand, 33384873 - 33384973
Alignment:
Q  841 aaatgttacatgaacactctttaaccatacactc-tattgtacac-ccatgcattaaggacattttggt-aattcatctcacagccatattttctctttc 937  Q
    ||||||||||||||||   ||||| ||||||| | ||||||| || |||||||||| |||||||||||| |||||||||||||  |||| ||||||||||    
T  33384873 aaatgttacatgaacatcatttaatcatacacccctattgtatactccatgcattagggacattttggtaaattcatctcacaaacatactttctctttc 33384972  T
Q  938 a 938  Q
    |    
T  33384973 a 33384973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 841 - 935
Target Start/End: Original strand, 9216305 - 9216400
Alignment:
Q  841 aaatgttacatgaacactctttaaccatacactctattgtacacccatgcattaaggacattttggtaa-ttcatctcacagccatattttctctt 935  Q
    ||||||||||||||||| |||||  | || |  |||||||||||||||||||||  || |||||||||| ||||||||||| ||| ||||| ||||    
T  9216305 aaatgttacatgaacaccctttattcctatatcctattgtacacccatgcattagagatattttggtaagttcatctcacaaccacattttatctt 9216400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 841 - 920
Target Start/End: Original strand, 5015398 - 5015479
Alignment:
Q  841 aaatgttacatgaacactctttaaccatacactctattgtacacc-catgcattaaggacattttggtaa-ttcatctcaca 920  Q
    |||||||||||||||||||||||    ||||||| |||||||||| |||| |||| ||| |||||||||| |||||||||||    
T  5015398 aaatgttacatgaacactctttatttctacactccattgtacacctcatgtattagggatattttggtaagttcatctcaca 5015479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 841 - 935
Target Start/End: Complemental strand, 4638296 - 4638200
Alignment:
Q  841 aaatgttacatgaacactctttaaccatacactctattgtaca-cccatgcattaaggacattttggtaa-ttcatctcacagccatattttctctt 935  Q
    |||||||||||||||||  ||||  ||||||||| |||||||| |||||  |||| ||| |||||||||| ||||||||||| ||||| ||| ||||    
T  4638296 aaatgttacatgaacaccttttattcatacactcaattgtacaccccatatattatggatattttggtaagttcatctcacaaccatactttatctt 4638200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 841 - 920
Target Start/End: Original strand, 35069724 - 35069805
Alignment:
Q  841 aaatgttacatgaacactctttaaccatacactctattgtacacc-catgcattaaggacattttggtaa-ttcatctcaca 920  Q
    |||||||||||||||||||||||  | |||||   |||||||||| |||| |||| ||| |||||||||| |||||||||||    
T  35069724 aaatgttacatgaacactctttattcctacacctcattgtacacctcatgtattagggatattttggtaagttcatctcaca 35069805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 60; Significance: 4e-25; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 60; E-Value: 4e-25
Query Start/End: Original strand, 841 - 938
Target Start/End: Original strand, 17208077 - 17208176
Alignment:
Q  841 aaatgttacatgaacactctttaaccatacactctattgtaca-cccatgcattaaggacattttggt-aattcatctcacagccatattttctctttca 938  Q
    ||||||||| ||||||| |||||| |||||||| ||||||||| |||||||||||||||||||||||| ||||||||||||| ||||| |||||||||||    
T  17208077 aaatgttacgtgaacaccctttaatcatacactttattgtacaccccatgcattaaggacattttggtaaattcatctcacaaccatactttctctttca 17208176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 52; E-Value: 3e-20
Query Start/End: Original strand, 841 - 938
Target Start/End: Complemental strand, 32473491 - 32473392
Alignment:
Q  841 aaatgttacatgaacactctttaaccatacactctattgtacacc-catgcattaaggacattttggtaa-ttcatctcacagccatattttctctttca 938  Q
    ||||||||||||||||| |||||| |||||||  ||||||||||| ||||||||| ||| |||||||||| ||||||||||| ||||| |||||||||||    
T  32473491 aaatgttacatgaacaccctttaatcatacaccttattgtacaccacatgcattagggatattttggtaatttcatctcacaaccatactttctctttca 32473392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 51; E-Value: 1e-19
Query Start/End: Original strand, 841 - 938
Target Start/End: Complemental strand, 30622815 - 30622717
Alignment:
Q  841 aaatgttacatgaacactctttaaccatacactctattgtacacccatgcattaaggacattttggt-aattcatctcacagccatattttctctttca 938  Q
    ||||||||||||||||  |||||| ||||||| ||||||||  ||||||||||||||| |||||||| |||| |||||||| ||||| |||||||||||    
T  30622815 aaatgttacatgaacatcctttaatcatacaccctattgtaagcccatgcattaaggatattttggtaaatttatctcacaaccatactttctctttca 30622717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 841 - 920
Target Start/End: Original strand, 7617136 - 7617217
Alignment:
Q  841 aaatgttacatgaacactctttaaccatacactctattgtaca-cccatgcattaaggacattttggtaa-ttcatctcaca 920  Q
    ||||||||||||||||| |||||  ||||||||| ||| |||| |||||| |||| ||| |||||||||| |||||||||||    
T  7617136 aaatgttacatgaacaccctttattcatacactccattatacaccccatgtattagggatattttggtaagttcatctcaca 7617217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 841 - 920
Target Start/End: Original strand, 22512308 - 22512389
Alignment:
Q  841 aaatgttacatgaacactctttaaccatacactctattgtacac-ccatgcattaaggacattttggtaa-ttcatctcaca 920  Q
    ||||||||||||||||| |||||  | ||||||| ||||||||| ||||| |||| ||| |||||||||| |||||||||||    
T  22512308 aaatgttacatgaacaccctttattcctacactccattgtacactccatgtattagggatattttggtaagttcatctcaca 22512389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 841 - 920
Target Start/End: Original strand, 18033985 - 18034066
Alignment:
Q  841 aaatgttacatgaacactctttaaccatacactctattgtacaccc-atgcattaaggacattttggtaa-ttcatctcaca 920  Q
    ||||||||||||||||| |||||  | ||||||| ||||||||||| ||| |||| ||| ||||| |||| |||||||||||    
T  18033985 aaatgttacatgaacaccctttattcctacactccattgtacaccctatgtattagggatatttttgtaagttcatctcaca 18034066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 841 - 909
Target Start/End: Original strand, 38470582 - 38470651
Alignment:
Q  841 aaatgttacatgaacactctttaaccatacactctattgtaca-cccatgcattaaggacattttggtaa 909  Q
    ||||||||||| ||||| |||||  |||||| || |||||||| |||||| |||||||| ||||||||||    
T  38470582 aaatgttacataaacaccctttattcatacattccattgtacaccccatgtattaaggatattttggtaa 38470651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 60; Significance: 4e-25; HSPs: 16)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 60; E-Value: 4e-25
Query Start/End: Original strand, 841 - 938
Target Start/End: Original strand, 43114560 - 43114659
Alignment:
Q  841 aaatgttacatgaacactctttaaccatacactctattgtaca-cccatgcattaaggacattttggtaa-ttcatctcacagccatattttctctttca 938  Q
    ||||||||||||||||| |||||| ||||||| |||||||||| ||||||||||| |||||||||||||| ||||||||||| ||||| |||||||||||    
T  43114560 aaatgttacatgaacaccctttaatcatacaccctattgtacaccccatgcattagggacattttggtaatttcatctcacaaccatactttctctttca 43114659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 56; E-Value: 1e-22
Query Start/End: Original strand, 841 - 938
Target Start/End: Complemental strand, 11825751 - 11825652
Alignment:
Q  841 aaatgttacatgaacactctttaaccatacactctattgtaca-cccatgcattaaggacattttggtaa-ttcatctcacagccatattttctctttca 938  Q
    ||||||||||||||||| |||||| ||||||| |||||||||| ||||||||||| |||||||||||||| |||||||||||  |||| |||||||||||    
T  11825751 aaatgttacatgaacaccctttaatcatacaccctattgtacaccccatgcattagggacattttggtaatttcatctcacaatcatactttctctttca 11825652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 56; E-Value: 1e-22
Query Start/End: Original strand, 841 - 938
Target Start/End: Original strand, 16803971 - 16804070
Alignment:
Q  841 aaatgttacatgaacactctttaaccatacactctattgtaca-cccatgcattaaggacattttggtaa-ttcatctcacagccatattttctctttca 938  Q
    ||||||||||||||||| |||||| ||||||| |||||||||| ||||||||||| |||||||||| ||| ||||||||||| ||||| |||||||||||    
T  16803971 aaatgttacatgaacaccctttaatcatacaccctattgtacatcccatgcattagggacattttgataatttcatctcacaaccatactttctctttca 16804070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 56; E-Value: 1e-22
Query Start/End: Original strand, 841 - 938
Target Start/End: Original strand, 16843253 - 16843352
Alignment:
Q  841 aaatgttacatgaacactctttaaccatacactctattgtaca-cccatgcattaaggacattttggtaa-ttcatctcacagccatattttctctttca 938  Q
    ||||||||||||||||| |||||| ||||||| |||||||||| ||||||||||| |||||||||| ||| ||||||||||| ||||| |||||||||||    
T  16843253 aaatgttacatgaacaccctttaatcatacaccctattgtacatcccatgcattagggacattttgataatttcatctcacaaccatactttctctttca 16843352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 56; E-Value: 1e-22
Query Start/End: Original strand, 841 - 938
Target Start/End: Original strand, 18491708 - 18491807
Alignment:
Q  841 aaatgttacatgaacactctttaaccatacactctattgtacacc-catgcattaaggacattttggt-aattcatctcacagccatattttctctttca 938  Q
    ||||||||||||||||| |||||| ||||||| |||||||||||| ||||||||||| |||||||||| ||||||||||||| ||||| || ||||||||    
T  18491708 aaatgttacatgaacaccctttaatcatacaccctattgtacacctcatgcattaagaacattttggtaaattcatctcacaaccatacttactctttca 18491807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 56; E-Value: 1e-22
Query Start/End: Original strand, 841 - 938
Target Start/End: Complemental strand, 41282071 - 41281972
Alignment:
Q  841 aaatgttacatgaacactctttaaccatacactctattgtaca-cccatgcattaaggacattttggtaa-ttcatctcacagccatattttctctttca 938  Q
    ||||||||||||||||| |||||| ||||||| |||||||||| ||||||||||| |||||||||| ||| ||||||||||| ||||| |||||||||||    
T  41282071 aaatgttacatgaacaccctttaatcatacaccctattgtacaccccatgcattagggacattttgataatttcatctcacaaccatactttctctttca 41281972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 52; E-Value: 3e-20
Query Start/End: Original strand, 841 - 938
Target Start/End: Complemental strand, 966931 - 966832
Alignment:
Q  841 aaatgttacatgaacactctttaaccatacactctattgtaca-cccatgcattaaggacattttggt-aattcatctcacagccatattttctctttca 938  Q
    ||||||||||||||||| |||||| ||||||| |||||||||| ||||||||||||| || ||||||| |||||||||||||  |||| |||||||||||    
T  966931 aaatgttacatgaacaccctttaatcatacaccctattgtacaccccatgcattaagaacgttttggtaaattcatctcacaaacatactttctctttca 966832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 52; E-Value: 3e-20
Query Start/End: Original strand, 841 - 938
Target Start/End: Complemental strand, 12415557 - 12415458
Alignment:
Q  841 aaatgttacatgaacactctttaaccatacactctattgtaca-cccatgcattaaggacattttggtaa-ttcatctcacagccatattttctctttca 938  Q
    ||||||||||||||||| |||||| |||||||  ||||||||| ||||||||||| |||||||||||||| || |||||||| ||||| |||||||||||    
T  12415557 aaatgttacatgaacaccctttaatcatacaccttattgtacaccccatgcattagggacattttggtaattttatctcacaaccatactttctctttca 12415458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 52; E-Value: 3e-20
Query Start/End: Original strand, 841 - 938
Target Start/End: Complemental strand, 12427617 - 12427518
Alignment:
Q  841 aaatgttacatgaacactctttaaccatacactctattgtaca-cccatgcattaaggacattttggtaa-ttcatctcacagccatattttctctttca 938  Q
    ||||||||||||||||| |||||| |||||||  ||||||||| ||||||||||| |||||||||||||| || |||||||| ||||| |||||||||||    
T  12427617 aaatgttacatgaacaccctttaatcatacaccttattgtacaccccatgcattagggacattttggtaattttatctcacaaccatactttctctttca 12427518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 50; E-Value: 4e-19
Query Start/End: Original strand, 841 - 920
Target Start/End: Complemental strand, 6518565 - 6518485
Alignment:
Q  841 aaatgttacatgaacactctttaaccatacactctattgtacaccc-atgcattaaggacattttggtaa-ttcatctcaca 920  Q
    ||||||||||||||||| |||||| ||||||||||||||||||||| |||||||| |||||||||||||| |||||||||||    
T  6518565 aaatgttacatgaacac-ctttaatcatacactctattgtacaccccatgcattagggacattttggtaatttcatctcaca 6518485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 46; E-Value: 1e-16
Query Start/End: Original strand, 841 - 920
Target Start/End: Complemental strand, 4299517 - 4299436
Alignment:
Q  841 aaatgttacatgaacactctttaaccatacactctattgtacac-ccatgcattaaggacattttggt-aattcatctcaca 920  Q
    |||||||| |||||||| |||||| ||||||| ||||||||||| ||||||||||| ||||||||||| |||||||||||||    
T  4299517 aaatgttatatgaacaccctttaatcatacaccctattgtacactccatgcattaatgacattttggtaaattcatctcaca 4299436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 836 - 938
Target Start/End: Complemental strand, 34895844 - 34895739
Alignment:
Q  836 aaaggaaa-tgttacatgaacactctttaaccatacactctattgtaca-cccatgcattaaggacattttggt-aattcatctcacagccatattttct 932  Q
    |||||||| ||||||||||||||  ||||| || |||| |||||||||| ||||||||||| |||||| ||||| |||||||||||||  |||| ||| |    
T  34895844 aaaggaaagtgttacatgaacaccatttaatcacacaccctattgtacaccccatgcattagggacatattggtaaattcatctcacaatcatactttat 34895745  T
Q  933 ctttca 938  Q
    ||||||    
T  34895744 ctttca 34895739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 853 - 938
Target Start/End: Original strand, 14285691 - 14285778
Alignment:
Q  853 aacactctttaaccatacactctattgtacaccc-atgcattaaggacattttggt-aattcatctcacagccatattttctctttca 938  Q
    ||||| |||||| ||||||| ||||||||||||| ||  ||||| || |||||||| ||||||||||| || |||| |||||||||||    
T  14285691 aacaccctttaatcatacaccctattgtacaccctatatattaaagatattttggtaaattcatctcagagtcatactttctctttca 14285778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 875 - 938
Target Start/End: Complemental strand, 4452013 - 4451948
Alignment:
Q  875 tattgtacaccc-atgcattaaggacattttggtaa-ttcatctcacagccatattttctctttca 938  Q
    |||||||||||  |||||||| ||| |||||||||| ||||||||||| ||||| |||||||||||    
T  4452013 tattgtacaccatatgcattagggatattttggtaaattcatctcacaaccatactttctctttca 4451948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 645 - 674
Target Start/End: Complemental strand, 13294278 - 13294249
Alignment:
Q  645 ggtaattttgtaagtttcatttaattaact 674  Q
    ||||||||||||||||||||||||||||||    
T  13294278 ggtaattttgtaagtttcatttaattaact 13294249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 841 - 920
Target Start/End: Original strand, 19047160 - 19047241
Alignment:
Q  841 aaatgttacatgaacactctttaaccatacactctattgtacaccc-atgcattaaggacattttggtaa-ttcatctcaca 920  Q
    ||||||||||||||||| |||||  | |||| || ||||||||||| ||| |||| ||| |||||||||| |||||||||||    
T  19047160 aaatgttacatgaacaccctttattcctacattccattgtacaccctatgtattagggatattttggtaagttcatctcaca 19047241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 60; Significance: 4e-25; HSPs: 14)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 60; E-Value: 4e-25
Query Start/End: Original strand, 841 - 938
Target Start/End: Original strand, 44112680 - 44112779
Alignment:
Q  841 aaatgttacatgaacactctttaaccatacactctattgtaca-cccatgcattaaggacattttggtaa-ttcatctcacagccatattttctctttca 938  Q
    ||||||||||||||||| |||||| ||||||| |||||||||| ||||||||||| |||||||||||||| ||||||||||| ||||| |||||||||||    
T  44112680 aaatgttacatgaacaccctttaatcatacaccctattgtacaccccatgcattagggacattttggtaatttcatctcacaaccatactttctctttca 44112779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 60; E-Value: 4e-25
Query Start/End: Original strand, 841 - 938
Target Start/End: Original strand, 48119631 - 48119730
Alignment:
Q  841 aaatgttacatgaacactctttaaccatacactctattgtaca-cccatgcattaaggacattttggt-aattcatctcacagccatattttctctttca 938  Q
    ||||||||||||||||| |||||| ||||||| |||||||||| ||||||||||||||| |||||||| ||||||||||||| ||||| |||||||||||    
T  48119631 aaatgttacatgaacaccctttaatcatacaccctattgtacaccccatgcattaaggatattttggtaaattcatctcacaaccatactttctctttca 48119730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 56; E-Value: 1e-22
Query Start/End: Original strand, 841 - 938
Target Start/End: Original strand, 35003297 - 35003396
Alignment:
Q  841 aaatgttacatgaacactctttaaccatacactctattgtaca-cccatgcattaaggacattttggt-aattcatctcacagccatattttctctttca 938  Q
    ||||||||||||||||| |||||| ||||||| |||||||||| ||||| ||||||||| |||||||| ||||||||||||| ||||| |||||||||||    
T  35003297 aaatgttacatgaacaccctttaatcatacaccctattgtacaccccatacattaaggatattttggtaaattcatctcacaaccatactttctctttca 35003396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 56; E-Value: 1e-22
Query Start/End: Original strand, 841 - 938
Target Start/End: Original strand, 38335921 - 38336020
Alignment:
Q  841 aaatgttacatgaacactctttaaccatacactctattgtaca-cccatgcattaaggacattttggt-aattcatctcacagccatattttctctttca 938  Q
    ||||||||||||||||| |||||| |||||||  ||||||||| ||||||||||||||| |||||||| ||||||||||||| ||||| |||||||||||    
T  38335921 aaatgttacatgaacaccctttaatcatacaccttattgtacatcccatgcattaaggatattttggtaaattcatctcacaaccatactttctctttca 38336020  T

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Target: chr1; HSP #5
Raw Score: 52; E-Value: 3e-20
Query Start/End: Original strand, 841 - 938
Target Start/End: Complemental strand, 38113292 - 38113193
Alignment:
Q  841 aaatgttacatgaacactctttaaccatacactctattgtaca-cccatgcattaaggacattttggt-aattcatctcacagccatattttctctttca 938  Q
    |||||||| |||||||| |||||| ||||||| |||||||||| |||||||||||| ||||||||||| ||||||||||||| ||||| || ||||||||    
T  38113292 aaatgttatatgaacaccctttaatcatacaccctattgtacaccccatgcattaatgacattttggtaaattcatctcacaaccatacttactctttca 38113193  T

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Target: chr1; HSP #6
Raw Score: 52; E-Value: 3e-20
Query Start/End: Original strand, 841 - 938
Target Start/End: Complemental strand, 45427842 - 45427743
Alignment:
Q  841 aaatgttacatgaacactctttaaccatacactctattgtacac-ccatgcattaaggacattttggtaa-ttcatctcacagccatattttctctttca 938  Q
    |||||||||||||| ||  ||||| ||||||| ||||||||||| |||||||||| |||||||||||||| ||||||||||| ||||| |||||||||||    
T  45427842 aaatgttacatgaataccttttaatcatacaccctattgtacactccatgcattagggacattttggtaatttcatctcacaaccatactttctctttca 45427743  T

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Target: chr1; HSP #7
Raw Score: 52; E-Value: 3e-20
Query Start/End: Original strand, 841 - 938
Target Start/End: Complemental strand, 45639829 - 45639730
Alignment:
Q  841 aaatgttacatgaacactctttaaccatacactctattgtaca-cccatgcattaaggacattttggt-aattcatctcacagccatattttctctttca 938  Q
    |||||||||||||||||||||||| ||||||  |||||||||| ||||| ||||||||| |||||||| |||||||||||||  |||| |||||||||||    
T  45639829 aaatgttacatgaacactctttaatcatacatcctattgtacaccccatacattaaggatattttggtaaattcatctcacaatcatactttctctttca 45639730  T

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Target: chr1; HSP #8
Raw Score: 52; E-Value: 3e-20
Query Start/End: Original strand, 841 - 938
Target Start/End: Original strand, 45705828 - 45705927
Alignment:
Q  841 aaatgttacatgaacactctttaaccatacactctattgtacac-ccatgcattaaggacattttggt-aattcatctcacagccatattttctctttca 938  Q
    |||||||| |||||||| |||||| |||||| |||||||||||| |||||||||| |||||||||| | ||||||||||||| ||||| |||||||||||    
T  45705828 aaatgttatatgaacaccctttaatcatacattctattgtacactccatgcattatggacattttgataaattcatctcacaaccatactttctctttca 45705927  T

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Target: chr1; HSP #9
Raw Score: 52; E-Value: 3e-20
Query Start/End: Original strand, 841 - 938
Target Start/End: Original strand, 46168386 - 46168485
Alignment:
Q  841 aaatgttacatgaacactctttaaccatacactctattgtacaccc-atgcattaaggacattttggt-aattcatctcacagccatattttctctttca 938  Q
    ||||||||||||||||| |||||| |||| |  ||||||||||||| |||||||||||| |||||||| ||||||||||||| ||||| |||||||||||    
T  46168386 aaatgttacatgaacaccctttaatcatatatcctattgtacacccaatgcattaaggatattttggtaaattcatctcacaaccatactttctctttca 46168485  T

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Target: chr1; HSP #10
Raw Score: 51; E-Value: 1e-19
Query Start/End: Original strand, 841 - 937
Target Start/End: Original strand, 41065156 - 41065254
Alignment:
Q  841 aaatgttacatgaacactctttaaccatacactctattgtaca-cccatgcattaaggacattttggtaa-ttcatctcacagccatattttctctttc 937  Q
    ||||||||||||||||| |||||| ||||||| || ||||||| ||||||||||| || ||||||||||| ||||||||||| ||||| ||||||||||    
T  41065156 aaatgttacatgaacaccctttaatcatacaccctgttgtacaccccatgcattaggggcattttggtaatttcatctcacaaccatactttctctttc 41065254  T

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Target: chr1; HSP #11
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 841 - 938
Target Start/End: Original strand, 26585465 - 26585564
Alignment:
Q  841 aaatgttacatgaacactctttaaccatacactctattgtaca-cccatgcattaaggacattttggt-aattcatctcacagccatattttctctttca 938  Q
    |||||||| ||||||| ||||||| |||||||| ||||||||| ||||||||||||||| ||||| || |||||||||| ||  |||| |||||||||||    
T  26585465 aaatgttagatgaacattctttaatcatacactatattgtacaccccatgcattaaggatattttagtaaattcatctcgcaatcatactttctctttca 26585564  T

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Target: chr1; HSP #12
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 841 - 938
Target Start/End: Complemental strand, 35000210 - 35000111
Alignment:
Q  841 aaatgttacatgaacactctttaaccatacactctattgtacac-ccatgcattaaggacattttggt-aattcatctcacagccatattttctctttca 938  Q
    |||||||||||||||||  ||||| |||||||||||||||| ||  |||| |||| |||||||||| | |||| |||||||| ||||| |||||||||||    
T  35000210 aaatgttacatgaacaccttttaatcatacactctattgtatacttcatgtattagggacattttgataaatttatctcacaaccatactttctctttca 35000111  T

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Target: chr1; HSP #13
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 841 - 894
Target Start/End: Original strand, 14427350 - 14427404
Alignment:
Q  841 aaatgttacatgaacactctttaaccatacactctattgtacacc-catgcatta 894  Q
    ||||||||||||||||| |||||| ||||||| |||||||||||| |||||||||    
T  14427350 aaatgttacatgaacaccctttaatcatacaccctattgtacacctcatgcatta 14427404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 841 - 920
Target Start/End: Complemental strand, 48499059 - 48498978
Alignment:
Q  841 aaatgttacatgaacactctttaaccatacactctattgtacacc-catgcattaaggacattttggtaa-ttcatctcaca 920  Q
    |||||||||||||||||||||||    ||||||| |||||||||| |||| |||| ||| |||||||||| |||||||||||    
T  48499059 aaatgttacatgaacactctttatttctacactccattgtacacctcatgtattagggatattttggtaagttcatctcaca 48498978  T

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Target: scaffold0003 (Bit Score: 52; Significance: 3e-20; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 52; E-Value: 3e-20
Query Start/End: Original strand, 841 - 938
Target Start/End: Complemental strand, 45816 - 45717
Alignment:
Q  841 aaatgttacatgaacactctttaaccatacactctattgtaca-cccatgcattaaggacattttggt-aattcatctcacagccatattttctctttca 938  Q
    ||||||||||||||||| |||||| ||||||| |||||||||| || ||| |||||||| |||||||| ||||||||||||| ||||| |||||||||||    
T  45816 aaatgttacatgaacaccctttaatcatacaccctattgtacatcctatgtattaaggatattttggtaaattcatctcacaaccatactttctctttca 45717  T

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Target: chr6 (Bit Score: 52; Significance: 3e-20; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 52; E-Value: 3e-20
Query Start/End: Original strand, 841 - 938
Target Start/End: Original strand, 27441545 - 27441644
Alignment:
Q  841 aaatgttacatgaacactctttaaccatacactctattgtaca-cccatgcattaaggacattttggt-aattcatctcacagccatattttctctttca 938  Q
    ||||||||||||||||| |||||| ||||||| |||||||||| || ||| |||||||| |||||||| ||||||||||||| ||||| |||||||||||    
T  27441545 aaatgttacatgaacaccctttaatcatacaccctattgtacatcctatgtattaaggatattttggtaaattcatctcacaaccatactttctctttca 27441644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 48; E-Value: 6e-18
Query Start/End: Original strand, 841 - 938
Target Start/End: Original strand, 33242406 - 33242505
Alignment:
Q  841 aaatgttacatgaacactctttaaccatacactctattgtaca-cccatgcattaaggacattttggt-aattcatctcacagccatattttctctttca 938  Q
    |||||||||||||||||  ||||| |||||||  ||||||||| |||||| ||||||||||||||||| |||||||||||||  |||| |||||||||||    
T  33242406 aaatgttacatgaacaccatttaatcatacaccttattgtacaccccatgtattaaggacattttggtaaattcatctcacaaacatactttctctttca 33242505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 841 - 920
Target Start/End: Original strand, 33253916 - 33253997
Alignment:
Q  841 aaatgttacatgaacactctttaaccatacactctattgtaca-cccatgcattaaggacattttggt-aattcatctcaca 920  Q
    |||||||||||||||||  ||||| || |||| |||||||||| ||||||||||| |||||| ||||| |||||||||||||    
T  33253916 aaatgttacatgaacaccatttaatcacacaccctattgtacaccccatgcattagggacatattggtaaattcatctcaca 33253997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 637 - 674
Target Start/End: Complemental strand, 11529681 - 11529644
Alignment:
Q  637 aattgcagggtaattttgtaagtttcatttaattaact 674  Q
    ||||| ||||||||||||||| ||||||||||||||||    
T  11529681 aattgaagggtaattttgtaaatttcatttaattaact 11529644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 841 - 920
Target Start/End: Complemental strand, 24204084 - 24204003
Alignment:
Q  841 aaatgttacatgaacactctttaaccatacactctattgtacac-ccatgcattaaggacattttggtaa-ttcatctcaca 920  Q
    |||||||||||||||||  ||||  | ||||| ||||||||||| ||||| |||| ||| |||||||||| |||||||||||    
T  24204084 aaatgttacatgaacaccatttattcctacaccctattgtacactccatgtattagggatattttggtaagttcatctcaca 24204003  T

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Target: scaffold0100 (Bit Score: 44; Significance: 0.000000000000001; HSPs: 1)
Name: scaffold0100
Description:

Target: scaffold0100; HSP #1
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 841 - 938
Target Start/End: Complemental strand, 35553 - 35454
Alignment:
Q  841 aaatgttacatgaacactctttaaccatacactctattgtacaccc-atgcattaaggacattttggtaa-ttcatctcacagccatattttctctttca 938  Q
    ||||||||||| |||||  ||||| |||||||  |||||||||||| |||||||| |||||| ||||||| ||||||||||| ||||| |||||||||||    
T  35553 aaatgttacataaacaccatttaatcatacaccatattgtacaccccatgcattagggacatattggtaaattcatctcacaaccatactttctctttca 35454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0038 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: scaffold0038
Description:

Target: scaffold0038; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 841 - 920
Target Start/End: Original strand, 112658 - 112739
Alignment:
Q  841 aaatgttacatgaacactctttaaccatacactctattgtacaccc-atgcattaaggacattttggtaa-ttcatctcaca 920  Q
    ||||||||||||||||| |||||  | |||| || ||||||||||| ||| |||| ||| |||||||||| |||||||||||    
T  112658 aaatgttacatgaacaccctttattcctacattccattgtacaccctatgtattagggatattttggtaagttcatctcaca 112739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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