View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5490-Insertion-5 (Length: 933)
Name: NF5490-Insertion-5
Description: NF5490
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5490-Insertion-5 |
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Alignment Details
Target: chr2 (Bit Score: 558; Significance: 0; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 558; E-Value: 0
Query Start/End: Original strand, 182 - 894
Target Start/End: Complemental strand, 26546688 - 26545974
Alignment:
| Q |
182 |
aaaaatgtacggactaatatgctaattgtttgtcgatatgacgatagcaatacaaatttgggggtgaatagacagacttcctctaaaatatttgcatgcg |
281 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||| |
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| T |
26546688 |
aaaaatgtacggactaatatgctaattgtttgtcgatatgacgatagcaatacaaatttgggg-tgaatagacaaacttcctctaaaatatttgcatgcg |
26546590 |
T |
|
| Q |
282 |
gaaacattttttcaaaattacttttgtaaattgatatgattggtggaaatgtgattaagaatactaaggatatcatcaactaaaacaatttacacaataa |
381 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26546589 |
gaaacattttttcaaaattacttttgtaaattgatatgattagtggaaatgtgattaagaatactaaggatatcatcaactaaaacaatttacacaataa |
26546490 |
T |
|
| Q |
382 |
actcaactttgaacaagagatttacaattgatttaatgtcacacaatcaaatatcaatcactcaattacaaaacctaaacattctcaacttaaggaacaa |
481 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26546489 |
actcaactttgaacaagagatttacaattgatttaatgtcacacaatcaaatatcaatcactcaattacaaaacctaaacattctcaacttaaggaacaa |
26546390 |
T |
|
| Q |
482 |
taagtgtaattttaccaactaaatataatataatagtagaattaaaattaaagaaaatgaattgga-------taagtggatattcgcgtcgatatgaat |
574 |
Q |
| |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||| |||||| || |
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| T |
26546389 |
taagtgcaattttaccaactaaatataatataatagtagaattaaaattaaagaaaatgaattggatctatactaagtggatattggcgccgatatagat |
26546290 |
T |
|
| Q |
575 |
ttgggtacatgttttctctcaactgtgaaaataggtactataacaccccacccgaactataccgtttgccattcctagttgtgtaaatgaaaaatgaaac |
674 |
Q |
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| T |
26546289 |
ttgggtacatgttttctcccaactgtgaaaataggtactataacaccccacccgaactataccatttgccattcctagttgtgtaaatgaaaaatgaaac |
26546190 |
T |
|
| Q |
675 |
aaaccnnnnnnnaggaagaaaaatgaaacaaaacttaagaaacattacatatgaatagtctttgtgcaagacatgaaagaataaaaaacaaatacactaa |
774 |
Q |
| |
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||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||| ||| |
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| T |
26546189 |
aaacctttttttaggaagaaaaatgaaacaaaacttaagaaagattacatatgaatagtctttgtg-----catgaaagaataaaaaacaaatacaataa |
26546095 |
T |
|
| Q |
775 |
tggaagaccaaaaaaataattatttgaatggtctctaatttccatttttctnnnnnnnnnnnntaaatccatttttcctctctatgaatgaaatgaatgt |
874 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
26546094 |
tggaagaccaaaaaaataattatttgaatggtctctaatttccatttttctaaaaaaaataaataaatccatttttcctctctatgaatgaaatgaatgt |
26545995 |
T |
|
| Q |
875 |
ctcctcat-aatctatattgg |
894 |
Q |
| |
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|||||||| |||||||||||| |
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| T |
26545994 |
ctcctcataaatctatattgg |
26545974 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 147; E-Value: 5e-77
Query Start/End: Original strand, 8 - 186
Target Start/End: Complemental strand, 26546970 - 26546792
Alignment:
| Q |
8 |
aacagaagctaagctctaaatctggtgattccaaggccatatttggaagtttaaaggggaaagggtttcgagaaaaagatatatagtttccaacttattg |
107 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
26546970 |
aacagaagctaagctctaaatctggtgattccaaggccacatttggaagtttaaaggggaaagggtttcgagaaaaagatatatagtttccaacctattg |
26546871 |
T |
|
| Q |
108 |
ggggtttatttttattcatcgtacgaagaattcaagaaatagttgaaaaaggattttagagggcttattgtataaaaaa |
186 |
Q |
| |
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| T |
26546870 |
agggtttatttttcttcatcgtatgaagcattcaagaaatagttgaaaaaggattttagagggcttactgtaaaaaaaa |
26546792 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 359 - 468
Target Start/End: Complemental strand, 19993147 - 19993037
Alignment:
| Q |
359 |
aactaaaacaatttacacaataaactcaactttgaacaagagatttacaattgatttaatgtcacacaatcaaatatcaat-cactcaattacaaaacct |
457 |
Q |
| |
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|||||||||||| | |||| || |||| |||||||| |||| | |||||||| |||| | ||||||||||| ||||| |||| ||||||||| ||| |
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| T |
19993147 |
aactaaaacaatgaatacaacaatatcaattttgaacaggagactcgcaattgatgtaatatttcacaatcaaatgtcaattcacttaattacaaatcct |
19993048 |
T |
|
| Q |
458 |
aaacattctca |
468 |
Q |
| |
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||||||||||| |
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| T |
19993047 |
aaacattctca |
19993037 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 57; Significance: 3e-23; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 57; E-Value: 3e-23
Query Start/End: Original strand, 389 - 469
Target Start/End: Original strand, 28733008 - 28733088
Alignment:
| Q |
389 |
tttgaacaagagatttacaattgatttaatgtcacacaatcaaatatcaatcactcaattacaaaacctaaacattctcaa |
469 |
Q |
| |
|
||||||||||||||| |||||||||||||||| |||||||||||||||||||||| ||||||||| ||||| |||||||| |
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| T |
28733008 |
tttgaacaagagattcacaattgatttaatgttacacaatcaaatatcaatcacttaattacaaaccctaattattctcaa |
28733088 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 46; Significance: 9e-17; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 46; E-Value: 9e-17
Query Start/End: Original strand, 361 - 458
Target Start/End: Complemental strand, 17275409 - 17275312
Alignment:
| Q |
361 |
ctaaaacaatttacacaataaactcaactttgaacaagagatttacaattgatttaatgtcacacaatcaaatatcaatcactcaattacaaaaccta |
458 |
Q |
| |
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|||||| ||| || |||||||| | |||||||||||||| ||| || ||||||||||||||||| |||||||||||| |||||||||| || ||||| |
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| T |
17275409 |
ctaaaagaatatagacaataaattaaactttgaacaagatattcacgattgatttaatgtcacattatcaaatatcaaccactcaattataacaccta |
17275312 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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