View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5490-Insertion-7 (Length: 694)
Name: NF5490-Insertion-7
Description: NF5490
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5490-Insertion-7 |
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| [»] chr2 (1 HSPs) |
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| [»] chr1 (2 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 429; Significance: 0; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 429; E-Value: 0
Query Start/End: Original strand, 8 - 580
Target Start/End: Complemental strand, 44689726 - 44689156
Alignment:
| Q |
8 |
gctatgactaagtaaaagatgttggtttaatacaattggttttgtagcttttgcgatagaactgacagcttttgtcaatgcccgaatgtggcgggacaag |
107 |
Q |
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| T |
44689726 |
gctatgactaagtaaaagatgttggtttaatacaattggttttgtagcttttgcgatagaactgacagcttttgtcaatgcccgaatgtggcgggacaag |
44689627 |
T |
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| Q |
108 |
aatagtgttacccttaaatggaagagttacattgagaataccataattttgaaaaatctaaatcaacattgcttggaaagtttctgttaaggatctagaa |
207 |
Q |
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|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44689626 |
aatagtgttacccttaaatgga---gttacattgagaataccataattttgaaaaatctaaatcaacattgcttggaaagtttctgttaaggatctagaa |
44689530 |
T |
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| Q |
208 |
gtggagnnnnnnnnggagtagcttttaattnnnnnnnnnnnnnnngtgatcatactattaaagataagaaagcaacaa-tgtaacaaagtaaatatgaac |
306 |
Q |
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| T |
44689529 |
gtggagttttttttggagtagcttttaattaaaaaaaaaaaaaaagtgatcatactattaaagataagaaagcaacaactgtaacaaagtaaatatgaac |
44689430 |
T |
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| Q |
307 |
aaaagccataaaccatatataacttggttatttactaacatagtatgagcaatttaataaaccaatgcagaggatccctttcattcaaattatgatacaa |
406 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
44689429 |
aaaagccataaaccatatataacttggttatttactaacatagtatgagcaatttaacaaaccaatgcagaggatccctttcattcaaattatgatacaa |
44689330 |
T |
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| Q |
407 |
cgaaaaagaatagacaactcagctttgttttttcatcgccaagtgttgaagaaagtgatagaagattcattgnnnnnnnttacacatatgaggggtgaga |
506 |
Q |
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| T |
44689329 |
cgaaaaagaatagacaactcagctttgttttttcattgccaagtgttgaagaaagtgatagaagattcattgaaaaaaattacacatatgaggggtgaga |
44689230 |
T |
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| Q |
507 |
aacaagagcaattgaaggaattgaaaagnnnnnnntaccaagtcttctaggaaagtgaacacttttggcaactg |
580 |
Q |
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| T |
44689229 |
aacaagagcaattgaaggaattgaaaagaaaaaaataccaagtcttctaggaaagagaacacttttggcaactg |
44689156 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 104; E-Value: 2e-51
Query Start/End: Original strand, 315 - 442
Target Start/End: Complemental strand, 44680260 - 44680134
Alignment:
| Q |
315 |
taaaccatatataacttggttatttactaacatagtatgagcaatttaataaaccaatgcagaggatccctttcattcaaattatgatacaacgaaaaag |
414 |
Q |
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||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||| |||||| |
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| T |
44680260 |
taaaccatatata-cttagttatttactaacatagtatgagcaatttaataaaccaatgcacatgatccctttcattcaaattatgatacaactaaaaag |
44680162 |
T |
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| Q |
415 |
aatagacaactcagctttgttttttcat |
442 |
Q |
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| T |
44680161 |
aatagacaactcagctttgttttttcat |
44680134 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 94; E-Value: 2e-45
Query Start/End: Original strand, 596 - 693
Target Start/End: Complemental strand, 44689101 - 44689004
Alignment:
| Q |
596 |
aagataatctttttatgaatgctgcagcattttaaggatccagtcaggaggtggccagaacaagttggagtaatcaggataatcggacaaaggggaaa |
693 |
Q |
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| T |
44689101 |
aagataatctttttatgaatgctgcagcattttaaggatccagtcaggaggtggccagaacaagttggagtgatcaggataatcggacaaaggggaaa |
44689004 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 8 - 81
Target Start/End: Complemental strand, 44680463 - 44680390
Alignment:
| Q |
8 |
gctatgactaagtaaaagatgttggtttaatacaattggttttgtagcttttgcgatagaactgacagcttttg |
81 |
Q |
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|||| ||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||| |||||||||| |
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| T |
44680463 |
gctaggactaagtaaaagatgttggtttaacacaattggttttgtagcttttgcaatagaaccaacagcttttg |
44680390 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 40; Significance: 0.0000000000003; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 631 - 686
Target Start/End: Original strand, 7025579 - 7025634
Alignment:
| Q |
631 |
ggatccagtcaggaggtggccagaacaagttggagtaatcaggataatcggacaaa |
686 |
Q |
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| T |
7025579 |
ggatccactctggaggtggccagaacaagttggaatattcaggataatcggacaaa |
7025634 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 642 - 679
Target Start/End: Original strand, 7041351 - 7041388
Alignment:
| Q |
642 |
ggaggtggccagaacaagttggagtaatcaggataatc |
679 |
Q |
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| T |
7041351 |
ggaggtggccagaacaagttggaatattcaggataatc |
7041388 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 38; Significance: 0.000000000004; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 632 - 693
Target Start/End: Original strand, 41980690 - 41980751
Alignment:
| Q |
632 |
gatccagtcaggaggtggccagaacaagttggagtaatcaggataatcggacaaaggggaaa |
693 |
Q |
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| T |
41980690 |
gatccattccggaggtggccctaacaagttgtagtattcaggataatcggacaaaggggaaa |
41980751 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 632 - 693
Target Start/End: Original strand, 41985464 - 41985525
Alignment:
| Q |
632 |
gatccagtcaggaggtggccagaacaagttggagtaatcaggataatcggacaaaggggaaa |
693 |
Q |
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| T |
41985464 |
gatccattccggaggtggccaaaacgaggtggagtactcaggataatcagacaaaggggaaa |
41985525 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 632 - 688
Target Start/End: Original strand, 9432720 - 9432776
Alignment:
| Q |
632 |
gatccagtcaggaggtggccagaacaagttggagtaatcaggataatcggacaaagg |
688 |
Q |
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| T |
9432720 |
gatccactccggaggtggccagaacaagttgtaatattcaggataatcagacaaagg |
9432776 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 359 - 406
Target Start/End: Original strand, 41983907 - 41983953
Alignment:
| Q |
359 |
tttaataaaccaatgcagaggatccctttcattcaaattatgatacaa |
406 |
Q |
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| T |
41983907 |
tttaataaaccaatgcacaggat-cctttcattcaaatgatgatacaa |
41983953 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 632 - 677
Target Start/End: Complemental strand, 9617745 - 9617700
Alignment:
| Q |
632 |
gatccagtcaggaggtggccagaacaagttggagtaatcaggataa |
677 |
Q |
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| T |
9617745 |
gatccaatccggaggtggccagaacaagttgaagtattcaggataa |
9617700 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 35; Significance: 0.0000000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 632 - 694
Target Start/End: Complemental strand, 20694560 - 20694498
Alignment:
| Q |
632 |
gatccagtcaggaggtggccagaacaagttggagtaatcaggataatcggacaaaggggaaag |
694 |
Q |
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|||||| |||||||| |||||||||||||| | || |||||||||||||||||||| ||||| |
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| T |
20694560 |
gatccactcaggaggaggccagaacaagttaaaatattcaggataatcggacaaaggtgaaag |
20694498 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 34; Significance: 0.000000001; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 633 - 694
Target Start/End: Original strand, 18991041 - 18991102
Alignment:
| Q |
633 |
atccagtcaggaggtggccagaacaagttggagtaatcaggataatcggacaaaggggaaag |
694 |
Q |
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||||| || ||||||||||||||||||||| |||| |||||||||| |||||||| ||||| |
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| T |
18991041 |
atccactccggaggtggccagaacaagttgaagtagtcaggataatgagacaaaggagaaag |
18991102 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 338 - 405
Target Start/End: Original strand, 18990683 - 18990749
Alignment:
| Q |
338 |
ttactaacatagtatgagcaatttaataaaccaatgcagaggatccctttcattcaaattatgataca |
405 |
Q |
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|||||||||||||| | |||||||||||||||||||| | ||| | |||||||||||||||||||| |
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| T |
18990683 |
ttactaacatagtacaaacaatttaataaaccaatgcacacaatcac-ttcattcaaattatgataca |
18990749 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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