View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5490-Insertion-8 (Length: 652)
Name: NF5490-Insertion-8
Description: NF5490
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5490-Insertion-8 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 625; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 625; E-Value: 0
Query Start/End: Original strand, 8 - 652
Target Start/End: Original strand, 7594221 - 7594865
Alignment:
| Q |
8 |
ttctgaacttgtctatttgcaagcgtgcaattattaatcttgagcctactaatggcagcttcaagaagcctcttcttagttctttcatccgctgaatttg |
107 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7594221 |
ttctgaacttgtctatttgcaagcgtgcaattattaatcttgagcctgctaatggcagcttcaagaagcctcttcttagttctttcatccgctgaatttg |
7594320 |
T |
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| Q |
108 |
cttccgctacaagaaaatcatgaaattcaggcaccccaatagctcttcgaatccctttattataatcaccaaaagggtcaaaaaattcacgaacttcatc |
207 |
Q |
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| T |
7594321 |
cttccgctacaagaaaatcatgaaattcaggcaccccaatagctcttcgaatccctttagtataatcaccaaaagggtcaaaaaattcacgaacttcatc |
7594420 |
T |
|
| Q |
208 |
aacttgaccagcttcaatcatacgatcaacgcgcgattgaagtgaagaatgaagcacaggcaatgaaacatcaacccatagaaaacaacattcatacctt |
307 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||| |
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| T |
7594421 |
aacttgaccagcttcaatcatacgatcaacgcgcgattgaagtgaagaatgaagcactggcaatgaaacatcaacccatagaaaacaacactcatacctt |
7594520 |
T |
|
| Q |
308 |
aacctaaattcagtacaatggttcactaaggtatctaagtaagaatttgaaccaccagcaataataggtaatccatctttttcaacaattgaatcaatgg |
407 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
7594521 |
aacctaaattcagtacaatggttcactaaggtatctaagtaagaatttgaaccaccagcaataataggtaatccatctttttccacaattgaatcaatgg |
7594620 |
T |
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| Q |
408 |
ctgaacaagcatggtaacaaaaatcattggcagtgaaatttgtggtaggatcaaatacacctaagagatggtgtgggaccccatcacactcttcttctgt |
507 |
Q |
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| T |
7594621 |
ctgaacaagcatggtaacaaaaatcattggcagtgaaatttgtggtaggatcaaatacacctaagagatggtgtgggaccccatcacactcttcttctgt |
7594720 |
T |
|
| Q |
508 |
caccttatttgttgtaatatcaagacctttgtaaacttgcattttgtctgaattcacaatttcagctggctgaaaatgtttggccaattctatggctaat |
607 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7594721 |
caccttatttgttgtaatatcaagacctttgtaaacttgcattttgtctgaattcacaatttcagctggctgaaaatgtttggccaattctatggctaat |
7594820 |
T |
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| Q |
608 |
ttggtctttccagttcctgtggcccccattatcactaccacctta |
652 |
Q |
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| T |
7594821 |
ttggtctttccagttcctgtggcccccattatcactaccacctta |
7594865 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 37; Significance: 0.00000000002; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 483 - 555
Target Start/End: Complemental strand, 48644214 - 48644142
Alignment:
| Q |
483 |
ggaccccatcacactcttcttctgtcaccttatttgttgtaatatcaagacctttgtaaacttgcattttgtc |
555 |
Q |
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| T |
48644214 |
ggaccccacgacactcttcttctgtgactttgtttgttgttatgtcaagtcctttgtaaacttgtattttgtc |
48644142 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 271 - 307
Target Start/End: Complemental strand, 48644426 - 48644390
Alignment:
| Q |
271 |
tgaaacatcaacccatagaaaacaacattcatacctt |
307 |
Q |
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| T |
48644426 |
tgaaacatcaacccaaagaaaacaacattcatacctt |
48644390 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 193 - 234
Target Start/End: Complemental strand, 48644504 - 48644463
Alignment:
| Q |
193 |
ttcacgaacttcatcaacttgaccagcttcaatcatacgatc |
234 |
Q |
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| T |
48644504 |
ttcacgaacttcgtcaacttgacctgcttcaatcatccgatc |
48644463 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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