View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5490-Insertion-9 (Length: 519)
Name: NF5490-Insertion-9
Description: NF5490
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5490-Insertion-9 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 497; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 497; E-Value: 0
Query Start/End: Original strand, 7 - 519
Target Start/End: Complemental strand, 34697390 - 34696878
Alignment:
| Q |
7 |
atggtggacgtgttgagcttgctaaagcctattacaaagcactaacctcatcagtgaagaaacatttcaaaggcaatggagttattgccagcatggagca |
106 |
Q |
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| T |
34697390 |
atggtggacgtgttgagcttgctaaagcctattacaaagcactgacctcatcagtgaagaaacatttcaatggcaatggagttattgccagcatggagca |
34697291 |
T |
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| Q |
107 |
ttgcaacgacttctttctccttggcacagaagccatttcccttggacgtgtaggagacgatttctggtgttctgatccatctggtgatccaaatggtaca |
206 |
Q |
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| T |
34697290 |
ttgcaacgacttctttctccttggcacagaagccatttcccttggacgtgtaggagatgatttctggtgttctgatccatctggtgatccaaatggtaca |
34697191 |
T |
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| Q |
207 |
tattggctccaaggttgtcacatggtacattgtgcctataacagtttatggatgggaaatttcattcacccagattgggacatgtttcaatccactcacc |
306 |
Q |
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| T |
34697190 |
tattggctccaaggttgtcacatggtacattgtgcctataacagtttatggatgggaaatttcattcacccagattgggacatgtttcaatccactcacc |
34697091 |
T |
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| Q |
307 |
cttgtgctgaatttcatgctgcctctagagctgtctccggtggaccaatttatgttagcgattgtgtcggtaatcacaatttcaagttgcttaaaactct |
406 |
Q |
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| T |
34697090 |
cttgtgctgaatttcatgctgcctctagagctgtctctggtggaccaatttatgttagcgattgtgtcggtaatcacaatttcaagttgcttaaaactct |
34696991 |
T |
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| Q |
407 |
tgttttgcctgatggttctatcttgcgttgtcaacattacgcactccctacacgagattgcttgtttgaagaccctttacatgatggccaaacaatgctc |
506 |
Q |
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| T |
34696990 |
tgttttgcctgatggttctatcttgcgttgtcaacattacgcactccctacacgagattgcttgtttgaagaccctttacatgatggccaaacaatgctc |
34696891 |
T |
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| Q |
507 |
aaaatttggaatc |
519 |
Q |
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| T |
34696890 |
aaaatttggaatc |
34696878 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 127; Significance: 2e-65; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 187 - 517
Target Start/End: Complemental strand, 43637964 - 43637634
Alignment:
| Q |
187 |
ctggtgatccaaatggtacatattggctccaaggttgtcacatggtacattgtgcctataacagtttatggatgggaaatttcattcacccagattggga |
286 |
Q |
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| T |
43637964 |
ctggggatccaaatggtacatattggttgcaaggatgtcacatggtgcattgtgcctataacagcttatggatgggaaattttatacaaccagattggga |
43637865 |
T |
|
| Q |
287 |
catgtttcaatccactcacccttgtgctgaatttcatgctgcctctagagctgtctccggtggaccaatttatgttagcgattgtgtcggtaatcacaat |
386 |
Q |
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| T |
43637864 |
catgttccaatctcatcatgcttgttctgaatttcatgctgcttctcgagcaatctctggcggaccaatttatgtaagcgactctgttggaaaccacaac |
43637765 |
T |
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| Q |
387 |
ttcaagttgcttaaaactcttgttttgcctgatggttctatcttgcgttgtcaacattacgcactccctacacgagattgcttgtttgaagaccctttac |
486 |
Q |
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| T |
43637764 |
ttcaagttactcaagaagctggttttgccggatggatcgattttgcggtgtcaacattatgcacttccaacgagagactctttatttgtagaccctttac |
43637665 |
T |
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| Q |
487 |
atgatggccaaacaatgctcaaaatttggaa |
517 |
Q |
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| T |
43637664 |
atgatggcaaaacaatgctcaaaatttggaa |
43637634 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 7 - 154
Target Start/End: Complemental strand, 43638368 - 43638221
Alignment:
| Q |
7 |
atggtggacgtgttgagcttgctaaagcctattacaaagcactaacctcatcagtgaagaaacatttcaaaggcaatggagttattgccagcatggagca |
106 |
Q |
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| T |
43638368 |
atggtggtcgagttgagcttgcaaaagcgtactacaaggcactaactgattccgtgaggaaacatttcaaaggcaatggtgtcatttccagtatgcaaca |
43638269 |
T |
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| Q |
107 |
ttgcaacgacttctttctccttggcacagaagccatttcccttggacg |
154 |
Q |
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| T |
43638268 |
atgcaacgatttcatgttccttggtacagaaaccatttcacttggacg |
43638221 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 94; Significance: 1e-45; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 165 - 358
Target Start/End: Original strand, 488848 - 489041
Alignment:
| Q |
165 |
gatttctggtgttctgatccatctggtgatccaaatggtacatattggctccaaggttgtcacatggtacattgtgcctataacagtttatggatgggaa |
264 |
Q |
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||||||||||| |||| |||| ||||||||||||||||||||||||||| ||||| ||||||||||| |||||||| || || || ||||||||||||| |
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| T |
488848 |
gatttctggtgcactgacccatatggtgatccaaatggtacatattggctacaaggatgtcacatggtgcattgtgcatacaatagcttatggatgggaa |
488947 |
T |
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| Q |
265 |
atttcattcacccagattgggacatgtttcaatccactcacccttgtgctgaatttcatgctgcctctagagctgtctccggtggaccaattta |
358 |
Q |
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| T |
488948 |
atttcatccaaccagattgggatatgtttcaatctacacacccttgtgctgcttttcatgcagcttctagagccatatctggtggtccaattta |
489041 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 57 - 157
Target Start/End: Original strand, 488429 - 488529
Alignment:
| Q |
57 |
tcagtgaagaaacatttcaaaggcaatggagttattgccagcatggagcattgcaacgacttctttctccttggcacagaagccatttcccttggacgtg |
156 |
Q |
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| T |
488429 |
tcagtgaaaaaacatttcaatggtaatggtgtcattgctagcatggaacattgcaatgatttcatgttgcttggaactgaagccatatcccttggtcgtg |
488528 |
T |
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| Q |
157 |
t |
157 |
Q |
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| T |
488529 |
t |
488529 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 480 - 517
Target Start/End: Original strand, 489163 - 489200
Alignment:
| Q |
480 |
cctttacatgatggccaaacaatgctcaaaatttggaa |
517 |
Q |
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||||||||||||||| |||| ||||||||||||||||| |
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| T |
489163 |
cctttacatgatggcaaaactatgctcaaaatttggaa |
489200 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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