View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5490_high_4 (Length: 441)
Name: NF5490_high_4
Description: NF5490
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5490_high_4 |
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Alignment Details
Target: chr3 (Bit Score: 123; Significance: 5e-63; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 123; E-Value: 5e-63
Query Start/End: Original strand, 273 - 424
Target Start/End: Complemental strand, 50671054 - 50670898
Alignment:
| Q |
273 |
gttcatattttgaacgctctaattttaatcaaaacactactgatctcttgaatgcatagggatcccctaacggcatggaatctaaatttactaaggcccc |
372 |
Q |
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| T |
50671054 |
gttcatattttgaacgctctaattttaatcaaaacactactgatctcttgaatgcatagggatcccctaacggcatggaatctaaatttaccaaggcccc |
50670955 |
T |
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| Q |
373 |
cactaagttggaataaaaccaccaaca------tacttctttgcttcaacttcaattc |
424 |
Q |
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| T |
50670954 |
cactaagttggaat-aaaccaccaacatactactacttctttgcttcaacttcaattc |
50670898 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 8 - 104
Target Start/End: Complemental strand, 50671345 - 50671249
Alignment:
| Q |
8 |
catcacagaatatataaaccccggatcaaacaatttaggcatccaaagaggcaaacatgcaacaacatagaacattagaatgttatgtgctattctg |
104 |
Q |
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| T |
50671345 |
catcacaaaatatataaaccccggatcaaacaatttaggcatccaaagaggcaaacatgcaacaacatagaacattagaatgttatgttctattctg |
50671249 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 129 - 190
Target Start/End: Complemental strand, 50671166 - 50671105
Alignment:
| Q |
129 |
ttaggtcggatcggattcccatgcaattactcattctccgcactgaatctcatttaagagac |
190 |
Q |
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| T |
50671166 |
ttaggtcggatcagattcccatgcaattactcattctccgcactgaatctcattcaagagac |
50671105 |
T |
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