View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5490_low_1 (Length: 1004)

Name: NF5490_low_1
Description: NF5490
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5490_low_1
NF5490_low_1
[»] chr2 (22 HSPs)
chr2 (1-574)||(30836437-30836992)
chr2 (686-989)||(30835942-30836245)
chr2 (272-562)||(30831023-30831313)
chr2 (262-517)||(30854244-30854496)
chr2 (261-528)||(30841719-30841984)
chr2 (575-679)||(30836283-30836387)
chr2 (878-984)||(30853899-30854005)
chr2 (914-989)||(30829003-30829078)
chr2 (879-984)||(30841324-30841429)
chr2 (599-660)||(7350543-7350604)
chr2 (623-663)||(18693662-18693702)
chr2 (599-679)||(20565059-20565139)
chr2 (624-679)||(24579652-24579707)
chr2 (624-679)||(25186226-25186281)
chr2 (613-679)||(4897554-4897620)
chr2 (613-679)||(4944948-4945014)
chr2 (613-663)||(23250320-23250370)
chr2 (629-679)||(37852037-37852087)
chr2 (626-679)||(20200729-20200782)
chr2 (626-679)||(35728923-35728976)
chr2 (610-679)||(37830721-37830790)
chr2 (626-679)||(38904085-38904138)
[»] chr4 (21 HSPs)
chr4 (595-671)||(38453258-38453334)
chr4 (595-679)||(50362123-50362207)
chr4 (594-679)||(7230272-7230357)
chr4 (594-679)||(2649717-2649802)
chr4 (593-662)||(10303512-10303581)
chr4 (626-679)||(30893413-30893466)
chr4 (596-664)||(20799393-20799461)
chr4 (595-679)||(49473638-49473722)
chr4 (596-671)||(12322667-12322742)
chr4 (596-663)||(14577507-14577574)
chr4 (596-679)||(19588148-19588231)
chr4 (593-679)||(8494978-8495064)
chr4 (593-663)||(16470295-16470365)
chr4 (629-679)||(18094432-18094482)
chr4 (613-679)||(20383499-20383565)
chr4 (613-679)||(44909835-44909901)
chr4 (613-679)||(48283311-48283377)
chr4 (613-679)||(56551576-56551642)
chr4 (595-664)||(8415494-8415563)
chr4 (614-679)||(23775530-23775595)
chr4 (596-645)||(49308814-49308863)
[»] chr1 (14 HSPs)
chr1 (595-663)||(5907792-5907860)
chr1 (594-679)||(24740824-24740909)
chr1 (596-663)||(25532967-25533034)
chr1 (613-679)||(17283962-17284028)
chr1 (609-679)||(45190253-45190323)
chr1 (592-645)||(15803255-15803308)
chr1 (594-662)||(1794588-1794656)
chr1 (596-679)||(25086477-25086560)
chr1 (596-663)||(26803451-26803518)
chr1 (594-661)||(35308177-35308244)
chr1 (609-679)||(8210369-8210439)
chr1 (596-662)||(29739331-29739397)
chr1 (594-679)||(45139990-45140075)
chr1 (604-657)||(50638922-50638975)
[»] chr7 (9 HSPs)
chr7 (593-679)||(27462420-27462506)
chr7 (593-663)||(27833401-27833471)
chr7 (595-671)||(33473513-33473589)
chr7 (624-679)||(3830090-3830145)
chr7 (594-663)||(8237632-8237701)
chr7 (596-663)||(10244721-10244788)
chr7 (593-664)||(44410589-44410660)
chr7 (613-663)||(18714459-18714509)
chr7 (594-663)||(19416506-19416575)
[»] chr5 (12 HSPs)
chr5 (593-679)||(37932321-37932407)
chr5 (600-679)||(27086076-27086155)
chr5 (609-679)||(16752486-16752556)
chr5 (596-645)||(16089444-16089493)
chr5 (595-663)||(6624769-6624837)
chr5 (595-679)||(27219281-27219365)
chr5 (596-679)||(5485180-5485263)
chr5 (596-663)||(15889405-15889472)
chr5 (594-645)||(42505864-42505915)
chr5 (613-663)||(5846040-5846090)
chr5 (593-663)||(22522801-22522871)
chr5 (596-645)||(36321512-36321561)
[»] chr3 (16 HSPs)
chr3 (613-679)||(51882184-51882250)
chr3 (595-679)||(1149053-1149137)
chr3 (593-645)||(10926460-10926512)
chr3 (596-679)||(45431942-45432025)
chr3 (609-662)||(759595-759648)
chr3 (615-676)||(10102812-10102873)
chr3 (615-676)||(10213735-10213796)
chr3 (613-653)||(23525131-23525171)
chr3 (592-679)||(14827515-14827602)
chr3 (596-679)||(35863797-35863880)
chr3 (624-671)||(41817521-41817568)
chr3 (590-656)||(3100209-3100275)
chr3 (613-663)||(10922308-10922358)
chr3 (595-645)||(16980372-16980422)
chr3 (593-663)||(52904143-52904213)
chr3 (594-663)||(16792974-16793043)
[»] chr8 (10 HSPs)
chr8 (595-679)||(13286124-13286207)
chr8 (595-671)||(15020754-15020830)
chr8 (596-678)||(18533663-18533745)
chr8 (595-679)||(36781401-36781485)
chr8 (612-679)||(7968925-7968991)
chr8 (595-681)||(8999873-8999960)
chr8 (596-663)||(27587215-27587282)
chr8 (593-679)||(444405-444490)
chr8 (624-677)||(8881297-8881350)
chr8 (592-645)||(23816780-23816833)
[»] chr6 (8 HSPs)
chr6 (593-664)||(31971520-31971591)
chr6 (596-671)||(7082984-7083059)
chr6 (624-663)||(32524420-32524459)
chr6 (587-662)||(33824866-33824941)
chr6 (594-663)||(9111039-9111108)
chr6 (594-639)||(13044638-13044683)
chr6 (626-679)||(18253323-18253376)
chr6 (609-678)||(26181700-26181769)
[»] scaffold0011 (1 HSPs)
scaffold0011 (594-663)||(185255-185324)
[»] scaffold0005 (1 HSPs)
scaffold0005 (596-663)||(239801-239868)
[»] scaffold0238 (1 HSPs)
scaffold0238 (613-663)||(25400-25450)
[»] scaffold0040 (1 HSPs)
scaffold0040 (593-679)||(56775-56860)


Alignment Details
Target: chr2 (Bit Score: 495; Significance: 0; HSPs: 22)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 495; E-Value: 0
Query Start/End: Original strand, 1 - 574
Target Start/End: Complemental strand, 30836992 - 30836437
Alignment:
Q  1 atggaaacaaaatgttaaaacagacaaaattcgaagtagggagaggatgattgatgacctctagtcctccatattacatatgtcaaatcgatcaagattc 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  30836992 atggaaacaaaatgttaaaacagacaaaattcgaagtagggagaggatgattgatgacctctagtcctccatattacatatgtcaaatctatcaagattc 30836893  T
Q  101 aaacaaaatattttctatgtttaaaacaattgatgcggtgggacttgatcgatccaaacaaatttcatgcggtttgcattctataaataggtttaattag 200  Q
    ||||||||                  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30836892 aaacaaaa------------------caattgatgcggtgggacttgatcgatccaaacaaatttcatgcggtttgcattctataaataggtttaattag 30836811  T
Q  201 gagaaaagaggccatatcttattttgcttgttatatacattgcgaattaataacaaagaaaatggaaggaatcaagaacccatcaggtacttctcttttg 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30836810 gagaaaagaggccatatcttattttgcttgttatatacattgcgaattaataacaaagaaaatggaaggaatcaagaacccatcaggtacttctcttttg 30836711  T
Q  301 gtaccatcagttcaagagttatctaaagatggaaatatttcaaccgttccaccaagatacattcagcctaatcatcaagacttgattctctctgaagttg 400  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30836710 gtaccatcagttcaagagttatctaaagatggaaatatttcaaccgttccaccaagatacattcagcctaatcatcaagacttgattctctctgaagttg 30836611  T
Q  401 atactaaccttgaaattccagttattgatatgtataagttgcattcagaagaatttgggagttcagaattggttaagcttcaccttgcttgcaaagattg 500  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  30836610 atactaaccttcaaattccagttattgatatgtataagttgcattcagaagaacttgggagttcagaattggttaagcttcaccttgcttgcaaagattg 30836511  T
Q  501 gtgtttctttcaggtctttttctctcttcaagcttcaatatctcaaatataagacatatgatgattttgggttt 574  Q
    | ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  30836510 gggtttctttcaggtctttttctctcttcaagcttcaatatctcaaatataagacatctgatgattttgggttt 30836437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 280; E-Value: 1e-156
Query Start/End: Original strand, 686 - 989
Target Start/End: Complemental strand, 30836245 - 30835942
Alignment:
Q  686 tgtgatttgatatataaattgtcttttcaaacattatatatgatatgtcaaacccaaaataatatcgaagattaaattagagattgaaaaaattgaaatt 785  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30836245 tgtgatttgatatataaattgtcttttaaaacattatatatgatatgtcaaacccaaaataatatcgaagattaaattagagattgaaaaaattgaaatt 30836146  T
Q  786 gatattcaattgataaatttgatgcttttctgtcataaattcaactgtttagtattattaatttaatttttgtatattcttaatatactatatagcttgt 885  Q
    |||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||| | ||    
T  30836145 gatattcaattgataaatttgatgcttttctgtcataaattcaactatttggtattattaatttaatttttgtatattcttaatatactatatagttggt 30836046  T
Q  886 aaatcatggtgttagttcaaatttgattgagaaaataaagttggagatacaagatttcttcaaccttccaatgtcagagaagaaaaagttttggcaaacc 985  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  30836045 aaatcatggtgttagttcaaatttgattgagaaaataaagttggagatacaagatttcttcaaccttccaatgtcagagaagaaaaagttttggcaaact 30835946  T
Q  986 cccc 989  Q
    ||||    
T  30835945 cccc 30835942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 235; E-Value: 1e-129
Query Start/End: Original strand, 272 - 562
Target Start/End: Complemental strand, 30831313 - 30831023
Alignment:
Q  272 tcaagaacccatcaggtacttctcttttggtaccatcagttcaagagttatctaaagatggaaatatttcaaccgttccaccaagatacattcagcctaa 371  Q
    ||||||| |||||||| ||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||    
T  30831313 tcaagaatccatcaggaacttctcttttggtaccatcagttcaagagttagctaaagatggaaagatttcaaccgttccaccaagatacattcagcctaa 30831214  T
Q  372 tcatcaagacttgattctctctgaagttgatactaaccttgaaattccagttattgatatgtataagttgcattcagaagaatttgggagttcagaattg 471  Q
    |||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  30831213 tcatcaagacttgattctatctgaagttgatactaaccttcaaattccagttattgatatgtataagttgcattcagaagaatttggaagttcagaattg 30831114  T
Q  472 gttaagcttcaccttgcttgcaaagattggtgtttctttcaggtctttttctctcttcaagcttcaatatctcaaatataagacatatgat 562  Q
     ||||| ||||||||||||||||||||||| | ||||||||||||||||||||||||||||||| ||||||| ||||||| ||||||||||    
T  30831113 cttaagtttcaccttgcttgcaaagattggggattctttcaggtctttttctctcttcaagcttaaatatcttaaatatatgacatatgat 30831023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 74; E-Value: 2e-33
Query Start/End: Original strand, 262 - 517
Target Start/End: Complemental strand, 30854496 - 30854244
Alignment:
Q  262 atggaaggaatcaagaacccatcaggtacttctcttttggtaccatcagttcaagagttatctaaagatggaaatatttcaaccgttccaccaagataca 361  Q
    |||||||  ||||||||||| || || ||||||||| ||||||||||||||||||||||  |||| ||   ||| |||||||| |||||||||||||| |    
T  30854496 atggaagagatcaagaacccctctggaacttctcttctggtaccatcagttcaagagttggctaagga---aaaaatttcaacagttccaccaagatata 30854400  T
Q  362 ttcagcctaatcatcaagacttgattctctctgaagttgatactaaccttgaaattccagttattgatatgtataagttgcattcagaagaatttgggag 461  Q
    ||||| || | ||  | || ||| |  ||  ||||| | ||| ||  |||||||||||||||||||||||| | || |||| |||   ||||| ||||||    
T  30854399 ttcagtctcaacacgatgaattggtcatcaatgaagctaatagtatacttgaaattccagttattgatatgaagaaattgctttctttagaatatgggag 30854300  T
Q  462 ttcagaattggttaagcttcaccttgcttgcaaagattggtgtttctttcaggtct 517  Q
    || |||||||  |||||||||||||||||||||||||||| | |||||||||||||    
T  30854299 tttagaattgtctaagcttcaccttgcttgcaaagattggggattctttcaggtct 30854244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 71; E-Value: 1e-31
Query Start/End: Original strand, 261 - 528
Target Start/End: Complemental strand, 30841984 - 30841719
Alignment:
Q  261 aatggaaggaatcaagaacccatcaggtacttctcttttggtaccatcagttcaagagttatctaaagatggaaatatttcaaccgttccaccaagatac 360  Q
    ||||||||  ||||||||||| || || ||||||||| ||||||||||||| ||||| ||  |||| ||   ||| |||||||| |||||| |||||||     
T  30841984 aatggaagagatcaagaacccctctggaacttctcttctggtaccatcagtccaagaattggctaagga---aaagatttcaacagttccagcaagatat 30841888  T
Q  361 attcagcctaatcatcaagacttgattctctctgaagttgatactaaccttgaaattccagttattgatatgtataagttgcattcagaagaatttggga 460  Q
    |||||| || | ||| |||| ||| |  ||  ||||| | ||| ||  |||||||||||||||||||||||| | || |||| |||   ||||| |||||    
T  30841887 attcagtctcaacatgaagaattggtcatcaatgaagctaatagtatacttgaaattccagttattgatatgaagaaattgctttctttagaatatggga 30841788  T
Q  461 gttcagaattggttaagcttcaccttgcttgcaaagattggtgtttctttcaggtct-ttttctctctt 528  Q
    ||| |||||||  |||||||||||||||||||||||||||| | ||||| ||||||| |||||||||||    
T  30841787 gtttagaattgtctaagcttcaccttgcttgcaaagattggggattcttccaggtctcttttctctctt 30841719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 69; E-Value: 2e-30
Query Start/End: Original strand, 575 - 679
Target Start/End: Complemental strand, 30836387 - 30836283
Alignment:
Q  575 acatttttagccttctgatttgtcctcgtaagcgtagttcagttggcaaggacaatgcataatatctgcaaaatccagggttcaaaccctagccaccgca 674  Q
    ||||||||||||||||||||||||||||||||| ||| ||||||||||  ||||||||||||||| | |||||| |||||||||||||||  ||||||||    
T  30836387 acatttttagccttctgatttgtcctcgtaagcttagctcagttggcagagacaatgcataatatttacaaaattcagggttcaaaccctgaccaccgca 30836288  T
Q  675 aaaaa 679  Q
    |||||    
T  30836287 aaaaa 30836283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 63; E-Value: 7e-27
Query Start/End: Original strand, 878 - 984
Target Start/End: Complemental strand, 30854005 - 30853899
Alignment:
Q  878 tagcttgtaaatcatggtgttagttcaaatttgattgagaaaataaagttggagatacaagatttcttcaaccttccaatgtcagagaagaaaaagtttt 977  Q
    ||||| |||||||||| |||||||||    ||| | |||||| ||||||||||||  |||||||||||||||||||||||||||||||||||||||||||    
T  30854005 tagctggtaaatcatgatgttagttcttccttggtggagaaagtaaagttggagactcaagatttcttcaaccttccaatgtcagagaagaaaaagtttt 30853906  T
Q  978 ggcaaac 984  Q
    |||||||    
T  30853905 ggcaaac 30853899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 56; E-Value: 1e-22
Query Start/End: Original strand, 914 - 989
Target Start/End: Complemental strand, 30829078 - 30829003
Alignment:
Q  914 gagaaaataaagttggagatacaagatttcttcaaccttccaatgtcagagaagaaaaagttttggcaaacccccc 989  Q
    |||||| |||| |||||||  |||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  30829078 gagaaagtaaaattggagactcaagatttcttcaaccttccaatgtcagagaagaaaaagttttggcaaactcccc 30829003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 46; E-Value: 1e-16
Query Start/End: Original strand, 879 - 984
Target Start/End: Complemental strand, 30841429 - 30841324
Alignment:
Q  879 agcttgtaaatcatggtgttagttcaaatttgattgagaaaataaagttggagatacaagatttcttcaaccttccaatgtcagagaagaaaaagttttg 978  Q
    ||||||||||||||| |||||||||    ||| | |||||| ||||| |||| ||    ||||| |||||||||||||||||||||||||||||||||||    
T  30841429 agcttgtaaatcatgatgttagttcttccttgttggagaaagtaaagatggaaattatggattttttcaaccttccaatgtcagagaagaaaaagttttg 30841330  T
Q  979 gcaaac 984  Q
    ||||||    
T  30841329 gcaaac 30841324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 599 - 660
Target Start/End: Original strand, 7350543 - 7350604
Alignment:
Q  599 ctcgtaagcgtagttcagttggcaaggacaatgcataatatctgcaaaatccagggttcaaa 660  Q
    ||||||||| ||| |||||||| | |||||||||||||||| |||||| || ||||||||||    
T  7350543 ctcgtaagcttagctcagttggtatggacaatgcataatatatgcaaagtctagggttcaaa 7350604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 623 - 663
Target Start/End: Complemental strand, 18693702 - 18693662
Alignment:
Q  623 aggacaatgcataatatctgcaaaatccagggttcaaaccc 663  Q
    ||||||||||||||||| ||||| |||||||||||||||||    
T  18693702 aggacaatgcataatatatgcaagatccagggttcaaaccc 18693662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 599 - 679
Target Start/End: Complemental strand, 20565139 - 20565059
Alignment:
Q  599 ctcgtaagcgtagttcagttggcaaggacaatgcataatatctgcaaaatccagggttcaaaccctagccaccgcaaaaaa 679  Q
    ||||| ||| ||| |||||||| | |||||||||||||||| |||||  ||| |||||||||||| | ||||| |||||||    
T  20565139 ctcgtgagcttagctcagttggtagggacaatgcataatatatgcaaggtccggggttcaaaccccaaccaccacaaaaaa 20565059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 624 - 679
Target Start/End: Complemental strand, 24579707 - 24579652
Alignment:
Q  624 ggacaatgcataatatctgcaaaatccagggttcaaaccctagccaccgcaaaaaa 679  Q
    |||||||||||||||| |||||  |||||||||||||| || |||||| |||||||    
T  24579707 ggacaatgcataatatatgcaaggtccagggttcaaactctggccaccacaaaaaa 24579652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 624 - 679
Target Start/End: Complemental strand, 25186281 - 25186226
Alignment:
Q  624 ggacaatgcataatatctgcaaaatccagggttcaaaccctagccaccgcaaaaaa 679  Q
    |||||||||||||||| |||||  ||| |||||||||||| ||||||| |||||||    
T  25186281 ggacaatgcataatatatgcaaggtccggggttcaaaccccagccaccacaaaaaa 25186226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 613 - 679
Target Start/End: Original strand, 4897554 - 4897620
Alignment:
Q  613 tcagttggcaaggacaatgcataatatctgcaaaatccagggttcaaaccctagccaccgcaaaaaa 679  Q
    |||||||| |||||||||||||||||| |||||  |  | |||||||||||| |||||| |||||||    
T  4897554 tcagttggtaaggacaatgcataatatatgcaaggtttatggttcaaaccctggccaccacaaaaaa 4897620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 613 - 679
Target Start/End: Original strand, 4944948 - 4945014
Alignment:
Q  613 tcagttggcaaggacaatgcataatatctgcaaaatccagggttcaaaccctagccaccgcaaaaaa 679  Q
    |||||||| |||||||||||||||||| |||||  |  | |||||||||||| |||||| |||||||    
T  4944948 tcagttggtaaggacaatgcataatatatgcaaggtttatggttcaaaccctggccaccacaaaaaa 4945014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 613 - 663
Target Start/End: Complemental strand, 23250370 - 23250320
Alignment:
Q  613 tcagttggcaaggacaatgcataatatctgcaaaatccagggttcaaaccc 663  Q
    |||||||| ||| |||||||||||||| |||||  ||||||||||||||||    
T  23250370 tcagttggtaagaacaatgcataatatatgcaaggtccagggttcaaaccc 23250320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 629 - 679
Target Start/End: Original strand, 37852037 - 37852087
Alignment:
Q  629 atgcataatatctgcaaaatccagggttcaaaccctagccaccgcaaaaaa 679  Q
    ||||||||||| |||||  |||||||||||||||||| ||||| |||||||    
T  37852037 atgcataatatatgcaaggtccagggttcaaaccctaaccaccacaaaaaa 37852087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 626 - 679
Target Start/End: Original strand, 20200729 - 20200782
Alignment:
Q  626 acaatgcataatatctgcaaaatccagggttcaaaccctagccaccgcaaaaaa 679  Q
    |||||||||||||| |||||  ||||||||||||||||  |||||| |||||||    
T  20200729 acaatgcataatatatgcaaggtccagggttcaaaccccggccaccacaaaaaa 20200782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 626 - 679
Target Start/End: Original strand, 35728923 - 35728976
Alignment:
Q  626 acaatgcataatatctgcaaaatccagggttcaaaccctagccaccgcaaaaaa 679  Q
    |||||||||||||| || ||| ||||||||||||| |||| ||||| |||||||    
T  35728923 acaatgcataatatatgtaaagtccagggttcaaatcctaaccaccacaaaaaa 35728976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 610 - 679
Target Start/End: Original strand, 37830721 - 37830790
Alignment:
Q  610 agttcagttggcaaggacaatgcataatatctgcaaaatccagggttcaaaccctagccaccgcaaaaaa 679  Q
    ||||||||||| | ||||||| |||||||| | ||| ||||| | |||||||||  ||||||||||||||    
T  37830721 agttcagttggtagggacaatacataatatatacaagatccaagattcaaaccccggccaccgcaaaaaa 37830790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 626 - 679
Target Start/End: Original strand, 38904085 - 38904138
Alignment:
Q  626 acaatgcataatatctgcaaaatccagggttcaaaccctagccaccgcaaaaaa 679  Q
    |||||||||||||| |||||  | |||||||||||||||| ||||| |||||||    
T  38904085 acaatgcataatatatgcaaggttcagggttcaaaccctaaccaccacaaaaaa 38904138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 41; Significance: 0.0000000000001; HSPs: 21)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 595 - 671
Target Start/End: Original strand, 38453258 - 38453334
Alignment:
Q  595 tgtcctcgtaagcgtagttcagttggcaaggacaatgcataatatctgcaaaatccagggttcaaaccctagccacc 671  Q
    ||||||||| ||| ||| |||||||||| |||||||||||||||| |||||  |||||||||| ||||| |||||||    
T  38453258 tgtcctcgtgagcttagctcagttggcatggacaatgcataatatatgcaaggtccagggttcgaaccccagccacc 38453334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 595 - 679
Target Start/End: Complemental strand, 50362207 - 50362123
Alignment:
Q  595 tgtcctcgtaagcgtagttcagttggcaaggacaatgcataatatctgcaaaatccagggttcaaaccctagccaccgcaaaaaa 679  Q
    ||||||||| ||| ||| |||||||| | |||||||||||||||| |||||  ||||||||||||||| | |||||| |||||||    
T  50362207 tgtcctcgtgagcttagctcagttggtagggacaatgcataatatatgcaaggtccagggttcaaaccttggccaccacaaaaaa 50362123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 594 - 679
Target Start/End: Original strand, 7230272 - 7230357
Alignment:
Q  594 ttgtcctcgtaagcgtagttcagttggcaaggacaatgcataatatctgcaaaatccagggttcaaaccctagccaccgcaaaaaa 679  Q
    |||||||||| ||| ||| |||||||| |||||||||||||||||| |||||  ||| |||||||||||   |||||| |||||||    
T  7230272 ttgtcctcgtgagcttagctcagttggtaaggacaatgcataatatatgcaaggtccggggttcaaacctcggccaccacaaaaaa 7230357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 594 - 679
Target Start/End: Complemental strand, 2649802 - 2649717
Alignment:
Q  594 ttgtcctcgtaagcgtagttcagttggcaaggacaatgcataatatctgcaaaatccagggttcaaaccctagccaccgcaaaaaa 679  Q
    |||||| ||||||  ||| |||||||| | |||||||||||||||| |||||  ||| | |||| ||||||||||||| |||||||    
T  2649802 ttgtccccgtaagtttagctcagttggtagggacaatgcataatatatgcaaggtccggagttcgaaccctagccaccacaaaaaa 2649717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 593 - 662
Target Start/End: Complemental strand, 10303581 - 10303512
Alignment:
Q  593 tttgtcctcgtaagcgtagttcagttggcaaggacaatgcataatatctgcaaaatccagggttcaaacc 662  Q
    ||||||||||| ||| ||| |||||||| ||||||||||||||| || ||||| |||| |||||| ||||    
T  10303581 tttgtcctcgtgagcttagctcagttggtaaggacaatgcataaaatatgcaagatccggggttcgaacc 10303512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 626 - 679
Target Start/End: Complemental strand, 30893466 - 30893413
Alignment:
Q  626 acaatgcataatatctgcaaaatccagggttcaaaccctagccaccgcaaaaaa 679  Q
    ||||||||| |||| |||||| |||| ||||||||||| |||||||||||||||    
T  30893466 acaatgcatgatatatgcaaagtccacggttcaaaccccagccaccgcaaaaaa 30893413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 596 - 664
Target Start/End: Complemental strand, 20799461 - 20799393
Alignment:
Q  596 gtcctcgtaagcgtagttcagttggcaaggacaatgcataatatctgcaaaatccagggttcaaaccct 664  Q
    |||||||| ||| ||| |||||||| | |||||||||||||||| |||||  ||| |||||||||||||    
T  20799461 gtcctcgtgagcttagctcagttggtagggacaatgcataatatatgcaaggtccggggttcaaaccct 20799393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 595 - 679
Target Start/End: Original strand, 49473638 - 49473722
Alignment:
Q  595 tgtcctcgtaagcgtagttcagttggcaaggacaatgcataatatctgcaaaatccagggttcaaaccctagccaccgcaaaaaa 679  Q
    ||||||||| ||| |||  ||||||| |||||||||||||||||| |||||  ||| |||||| ||||| || |||| |||||||    
T  49473638 tgtcctcgtgagcttagcccagttggtaaggacaatgcataatatatgcaaggtccggggttcgaaccccagtcaccacaaaaaa 49473722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 596 - 671
Target Start/End: Original strand, 12322667 - 12322742
Alignment:
Q  596 gtcctcgtaagcgtagttcagttggcaaggacaatgcataatatctgcaaaatccagggttcaaaccctagccacc 671  Q
    |||||||| ||| ||| |||||||| | |||||||||||||||| |||||  ||| |||||||||||  |||||||    
T  12322667 gtcctcgtgagcttagctcagttggtacggacaatgcataatatatgcaagttccggggttcaaacctcagccacc 12322742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 596 - 663
Target Start/End: Complemental strand, 14577574 - 14577507
Alignment:
Q  596 gtcctcgtaagcgtagttcagttggcaaggacaatgcataatatctgcaaaatccagggttcaaaccc 663  Q
    |||||||| ||  ||| |||||||| |||||||||||||||||| |||||| ||| | ||||||||||    
T  14577574 gtcctcgtgagtttagctcagttggtaaggacaatgcataatatatgcaaagtccggagttcaaaccc 14577507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 596 - 679
Target Start/End: Original strand, 19588148 - 19588231
Alignment:
Q  596 gtcctcgtaagcgtagttcagttggcaaggacaatgcataatatctgcaaaatccagggttcaaaccctagccaccgcaaaaaa 679  Q
    |||||||| ||| ||| ||| |||| | ||||||||||||| || |||||  ||||||||||||||||  |||||| |||||||    
T  19588148 gtcctcgtgagcttagctcaattggtatggacaatgcataaaatatgcaaggtccagggttcaaaccccggccaccacaaaaaa 19588231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 593 - 679
Target Start/End: Original strand, 8494978 - 8495064
Alignment:
Q  593 tttgtcctcgtaagcgtagttcagttggcaaggacaatgcataatatctgcaaaatccagggttcaaaccctagccaccgcaaaaaa 679  Q
    ||||||||||| | | ||| |||||||| | |||||||||||||||| ||||| |||| | ||||||| ||  |||||| |||||||    
T  8494978 tttgtcctcgtgaacttagctcagttggtagggacaatgcataatatatgcaagatcccgagttcaaatcccggccaccacaaaaaa 8495064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 593 - 663
Target Start/End: Original strand, 16470295 - 16470365
Alignment:
Q  593 tttgtcctcgtaagcgtagttcagttggcaaggacaatgcataatatctgcaaaatccagggttcaaaccc 663  Q
    ||||||||||| ||||||| ||| |||| | ||||||||||||| || |||||  |||||||||| |||||    
T  16470295 tttgtcctcgtgagcgtagctcaattggtatggacaatgcataaaatatgcaaggtccagggttcgaaccc 16470365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 629 - 679
Target Start/End: Original strand, 18094432 - 18094482
Alignment:
Q  629 atgcataatatctgcaaaatccagggttcaaaccctagccaccgcaaaaaa 679  Q
    ||||||||||| |||||  |||||||||||||||||| ||||| |||||||    
T  18094432 atgcataatatatgcaaggtccagggttcaaaccctaaccaccacaaaaaa 18094482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 613 - 679
Target Start/End: Original strand, 20383499 - 20383565
Alignment:
Q  613 tcagttggcaaggacaatgcataatatctgcaaaatccagggttcaaaccctagccaccgcaaaaaa 679  Q
    |||||||| | |||||||||||||||| |||||  ||| |||||||||||| | ||||| |||||||    
T  20383499 tcagttggtatggacaatgcataatatatgcaaggtccggggttcaaaccccatccaccacaaaaaa 20383565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 613 - 679
Target Start/End: Original strand, 44909835 - 44909901
Alignment:
Q  613 tcagttggcaaggacaatgcataatatctgcaaaatccagggttcaaaccctagccaccgcaaaaaa 679  Q
    |||||||| || ||||||||||| ||| |||||| | |||||||||||||  ||||||| |||||||    
T  44909835 tcagttggtaaagacaatgcatagtatatgcaaagttcagggttcaaacctcagccaccacaaaaaa 44909901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 613 - 679
Target Start/End: Complemental strand, 48283377 - 48283311
Alignment:
Q  613 tcagttggcaaggacaatgcataatatctgcaaaatccagggttcaaaccctagccaccgcaaaaaa 679  Q
    ||||||||||| ||||||||||||||| |||||  || |||||||||| || || |||| |||||||    
T  48283377 tcagttggcaatgacaatgcataatatatgcaagttctagggttcaaatcccagacaccacaaaaaa 48283311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 613 - 679
Target Start/End: Complemental strand, 56551642 - 56551576
Alignment:
Q  613 tcagttggcaaggacaatgcataatatctgcaaaatccagggttcaaaccctagccaccgcaaaaaa 679  Q
    |||||||| |||||||||||||||||| |||||  |||  |||||||||||  |||||| |||||||    
T  56551642 tcagttggtaaggacaatgcataatatatgcaaggtccgaggttcaaaccccggccaccacaaaaaa 56551576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 595 - 664
Target Start/End: Complemental strand, 8415563 - 8415494
Alignment:
Q  595 tgtcctcgtaagcgtagttcagttggcaaggacaatgcataatatctgcaaaatccagggttcaaaccct 664  Q
    ||||||| | ||| || ||||||||| | |||||||||||||||| || || ||||| ||||||||||||    
T  8415563 tgtcctcatgagcttaattcagttggtatggacaatgcataatatatgtaagatccaaggttcaaaccct 8415494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 614 - 679
Target Start/End: Original strand, 23775530 - 23775595
Alignment:
Q  614 cagttggcaaggacaatgcataatatctgcaaaatccagggttcaaaccctagccaccgcaaaaaa 679  Q
    ||||||| | |||||||||||||||| |||||  |||||||||| ||||| | ||||| |||||||    
T  23775530 cagttggtagggacaatgcataatatatgcaaggtccagggttcgaaccccaaccaccacaaaaaa 23775595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 596 - 645
Target Start/End: Original strand, 49308814 - 49308863
Alignment:
Q  596 gtcctcgtaagcgtagttcagttggcaaggacaatgcataatatctgcaa 645  Q
    |||| ||||||| ||| ||||||| ||||||||||||||||||| |||||    
T  49308814 gtccccgtaagcttagctcagttgacaaggacaatgcataatatatgcaa 49308863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 41; Significance: 0.0000000000001; HSPs: 14)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 595 - 663
Target Start/End: Original strand, 5907792 - 5907860
Alignment:
Q  595 tgtcctcgtaagcgtagttcagttggcaaggacaatgcataatatctgcaaaatccagggttcaaaccc 663  Q
    ||||| ||| ||| ||| ||||||||||||||||||||||||||| |||||  ||||||||||||||||    
T  5907792 tgtccccgtgagcttagctcagttggcaaggacaatgcataatatatgcaaggtccagggttcaaaccc 5907860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 594 - 679
Target Start/End: Complemental strand, 24740909 - 24740824
Alignment:
Q  594 ttgtcctcgtaagcgtagttcagttggcaaggacaatgcataatatctgcaaaatccagggttcaaaccctagccaccgcaaaaaa 679  Q
    |||||||||| ||||||| |||||||| | |||||||| || || | ||||| |||| |||||||||||| ||||||| |||||||    
T  24740909 ttgtcctcgtgagcgtagctcagttggtagggacaatgtatgatgtatgcaagatccggggttcaaaccccagccaccacaaaaaa 24740824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 596 - 663
Target Start/End: Original strand, 25532967 - 25533034
Alignment:
Q  596 gtcctcgtaagcgtagttcagttggcaaggacaatgcataatatctgcaaaatccagggttcaaaccc 663  Q
    |||||||| ||| |||||||||||| | |||||||||||||||| |||||  ||| ||||||||||||    
T  25532967 gtcctcgtgagcttagttcagttggtatggacaatgcataatatatgcaaggtccggggttcaaaccc 25533034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 613 - 679
Target Start/End: Original strand, 17283962 - 17284028
Alignment:
Q  613 tcagttggcaaggacaatgcataatatctgcaaaatccagggttcaaaccctagccaccgcaaaaaa 679  Q
    |||||||| |||||||||||||||||| |||||  |||||||||| |||||| | |||| |||||||    
T  17283962 tcagttggtaaggacaatgcataatatatgcaaggtccagggttcgaaccctggacaccacaaaaaa 17284028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 609 - 679
Target Start/End: Complemental strand, 45190323 - 45190253
Alignment:
Q  609 tagttcagttggcaaggacaatgcataatatctgcaaaatccagggttcaaaccctagccaccgcaaaaaa 679  Q
    |||||||||||| | |||||||||||||||| |||||  | | || ||||||||||||||||| |||||||    
T  45190323 tagttcagttggtatggacaatgcataatatatgcaaggttcgggattcaaaccctagccaccacaaaaaa 45190253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 592 - 645
Target Start/End: Complemental strand, 15803308 - 15803255
Alignment:
Q  592 atttgtcctcgtaagcgtagttcagttggcaaggacaatgcataatatctgcaa 645  Q
    |||| ||| ||| ||| ||||||||||||||||||||||||||||||| |||||    
T  15803308 atttatccccgtgagcttagttcagttggcaaggacaatgcataatatatgcaa 15803255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 594 - 662
Target Start/End: Original strand, 1794588 - 1794656
Alignment:
Q  594 ttgtcctcgtaagcgtagttcagttggcaaggacaatgcataatatctgcaaaatccagggttcaaacc 662  Q
    |||||||||| ||| ||| |||||| | | |||||||||||||||| ||||| |||| |||||||||||    
T  1794588 ttgtcctcgtgagcttagctcagttagtatggacaatgcataatatatgcaagatccggggttcaaacc 1794656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 596 - 679
Target Start/End: Original strand, 25086477 - 25086560
Alignment:
Q  596 gtcctcgtaagcgtagttcagttggcaaggacaatgcataatatctgcaaaatccagggttcaaaccctagccaccgcaaaaaa 679  Q
    ||||| || ||| ||| |||||||| | ||||||||||||| || |||||  || |||||||||| |||||||||| |||||||    
T  25086477 gtccttgtgagcttagctcagttggtatggacaatgcataaaatatgcaaggtctagggttcaaatcctagccaccacaaaaaa 25086560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 596 - 663
Target Start/End: Complemental strand, 26803518 - 26803451
Alignment:
Q  596 gtcctcgtaagcgtagttcagttggcaaggacaatgcataatatctgcaaaatccagggttcaaaccc 663  Q
    |||||||| | | ||| |||||||| | |||||||||||||||| |||||| ||| ||||||||||||    
T  26803518 gtcctcgtgaacttagctcagttggtatggacaatgcataatatatgcaaagtccggggttcaaaccc 26803451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 594 - 661
Target Start/End: Original strand, 35308177 - 35308244
Alignment:
Q  594 ttgtcctcgtaagcgtagttcagttggcaaggacaatgcataatatctgcaaaatccagggttcaaac 661  Q
    |||||||||| ||| |||||||||||| | | |||||||||||||| | |||||||  ||||||||||    
T  35308177 ttgtcctcgtgagcttagttcagttggtatgaacaatgcataatatatacaaaatctggggttcaaac 35308244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 609 - 679
Target Start/End: Complemental strand, 8210439 - 8210369
Alignment:
Q  609 tagttcagttggcaaggacaatgcataatatctgcaaaatccagggttcaaaccctagccaccgcaaaaaa 679  Q
    ||||| |||||| |||||||||||||||||| | |||  |||||||||| |||||  |||||| |||||||    
T  8210439 tagtttagttggtaaggacaatgcataatatatacaaggtccagggttcgaaccccggccaccacaaaaaa 8210369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 596 - 662
Target Start/End: Original strand, 29739331 - 29739397
Alignment:
Q  596 gtcctcgtaagcgtagttcagttggcaaggacaatgcataatatctgcaaaatccagggttcaaacc 662  Q
    |||||||| ||| ||| |||||||| ||||||||||||||| || |||||  ||| |||||||||||    
T  29739331 gtcctcgttagcttagctcagttggtaaggacaatgcataaaatatgcaaggtccggggttcaaacc 29739397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 594 - 679
Target Start/End: Complemental strand, 45140075 - 45139990
Alignment:
Q  594 ttgtcctcgtaagcgtagttcagttggcaaggacaatgcataatatctgcaaaatccagggttcaaaccctagccaccgcaaaaaa 679  Q
    |||||| ||| ||| ||| |||||||| | |||||||||||||||| |||||  ||||| ||| ||||||  |||||| |||||||    
T  45140075 ttgtccccgtgagcttagctcagttggtatggacaatgcataatatatgcaaggtccagagtttaaaccccggccaccacaaaaaa 45139990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 604 - 657
Target Start/End: Complemental strand, 50638975 - 50638922
Alignment:
Q  604 aagcgtagttcagttggcaaggacaatgcataatatctgcaaaatccagggttc 657  Q
    |||| ||| |||||||| |||||||||||||||||| |||||  ||||||||||    
T  50638975 aagcttagctcagttggtaaggacaatgcataatatatgcaaggtccagggttc 50638922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 39; Significance: 0.000000000002; HSPs: 9)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 593 - 679
Target Start/End: Complemental strand, 27462506 - 27462420
Alignment:
Q  593 tttgtcctcgtaagcgtagttcagttggcaaggacaatgcataatatctgcaaaatccagggttcaaaccctagccaccgcaaaaaa 679  Q
    ||||||||||| ||| ||| |||||||| | |||||||||||||||| |||||  ||| ||||||||||||  |||||| |||||||    
T  27462506 tttgtcctcgtgagcatagctcagttggtatggacaatgcataatatatgcaaggtccggggttcaaaccccggccaccacaaaaaa 27462420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 593 - 663
Target Start/End: Complemental strand, 27833471 - 27833401
Alignment:
Q  593 tttgtcctcgtaagcgtagttcagttggcaaggacaatgcataatatctgcaaaatccagggttcaaaccc 663  Q
    ||||||||||||||| ||| |||||||| |||||||||||||||||| || ||  ||| ||||||||||||    
T  27833471 tttgtcctcgtaagcctagctcagttggtaaggacaatgcataatatatgtaaggtccggggttcaaaccc 27833401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 595 - 671
Target Start/End: Complemental strand, 33473589 - 33473513
Alignment:
Q  595 tgtcctcgtaagcgtagttcagttggcaaggacaatgcataatatctgcaaaatccagggttcaaaccctagccacc 671  Q
    ||||||||| ||  |||||||||  |||||||||||||||||||| |||||  |||||||||| |||||| ||||||    
T  33473589 tgtcctcgtgagtttagttcagtcagcaaggacaatgcataatatatgcaaggtccagggttccaaccctggccacc 33473513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 624 - 679
Target Start/End: Original strand, 3830090 - 3830145
Alignment:
Q  624 ggacaatgcataatatctgcaaaatccagggttcaaaccctagccaccgcaaaaaa 679  Q
    |||||||||||||||| |||||  |||||||||||||||| ||||||| |||||||    
T  3830090 ggacaatgcataatatatgcaaggtccagggttcaaaccccagccaccacaaaaaa 3830145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 594 - 663
Target Start/End: Complemental strand, 8237701 - 8237632
Alignment:
Q  594 ttgtcctcgtaagcgtagttcagttggcaaggacaatgcataatatctgcaaaatccagggttcaaaccc 663  Q
    |||||||||| ||| |||||| ||||| |||||||||||||||||| | |||| |||  |||||||||||    
T  8237701 ttgtcctcgtgagcttagttctgttggtaaggacaatgcataatatatacaaagtccgaggttcaaaccc 8237632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 596 - 663
Target Start/End: Original strand, 10244721 - 10244788
Alignment:
Q  596 gtcctcgtaagcgtagttcagttggcaaggacaatgcataatatctgcaaaatccagggttcaaaccc 663  Q
    |||||||| ||| ||| |||||||| | |||||||||||||||| |||||  ||| ||||||||||||    
T  10244721 gtcctcgtgagcttagctcagttggtatggacaatgcataatatatgcaaggtccggggttcaaaccc 10244788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 593 - 664
Target Start/End: Original strand, 44410589 - 44410660
Alignment:
Q  593 tttgtcctcgtaagcgtagttcagttggcaaggacaatgcataatatctgcaaaatccagggttcaaaccct 664  Q
    |||||| |||||||| |||||||||||||| |||||||| ||||||| | |||  ||| |||||| ||||||    
T  44410589 tttgtcttcgtaagcttagttcagttggcatggacaatgtataatatatacaaggtccggggttcgaaccct 44410660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 613 - 663
Target Start/End: Original strand, 18714459 - 18714509
Alignment:
Q  613 tcagttggcaaggacaatgcataatatctgcaaaatccagggttcaaaccc 663  Q
    |||||||| |||||||||||||||||| |||||  ||| ||||||||||||    
T  18714459 tcagttggtaaggacaatgcataatatatgcaaggtccggggttcaaaccc 18714509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 594 - 663
Target Start/End: Original strand, 19416506 - 19416575
Alignment:
Q  594 ttgtcctcgtaagcgtagttcagttggcaaggacaatgcataatatctgcaaaatccagggttcaaaccc 663  Q
    |||||||||| ||| ||| |||||||| | ||||||||||||| || |||||  ||| ||||||||||||    
T  19416506 ttgtcctcgtgagcttagctcagttggtatggacaatgcataaaatatgcaaggtccggggttcaaaccc 19416575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 39; Significance: 0.000000000002; HSPs: 12)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 593 - 679
Target Start/End: Original strand, 37932321 - 37932407
Alignment:
Q  593 tttgtcctcgtaagcgtagttcagttggcaaggacaatgcataatatctgcaaaatccagggttcaaaccctagccaccgcaaaaaa 679  Q
    ||||||||||| ||| ||| |||||||| | |||||||||||||||| |||||  ||| |||||| |||||| |||||| |||||||    
T  37932321 tttgtcctcgtgagcttagctcagttggtatggacaatgcataatatatgcaaggtccggggttcgaaccctggccaccacaaaaaa 37932407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 600 - 679
Target Start/End: Original strand, 27086076 - 27086155
Alignment:
Q  600 tcgtaagcgtagttcagttggcaaggacaatgcataatatctgcaaaatccagggttcaaaccctagccaccgcaaaaaa 679  Q
    |||| ||| |||||||||| | ||| |||||| ||||||| |||||  |||||||||||||||| ||||||| |||||||    
T  27086076 tcgtgagcttagttcagtttgtaagaacaatgtataatatatgcaaggtccagggttcaaaccccagccaccacaaaaaa 27086155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 609 - 679
Target Start/End: Complemental strand, 16752556 - 16752486
Alignment:
Q  609 tagttcagttggcaaggacaatgcataatatctgcaaaatccagggttcaaaccctagccaccgcaaaaaa 679  Q
    |||||||||||| |||||||||||||||||| ||||| || | |||||| || || ||||||| |||||||    
T  16752556 tagttcagttggtaaggacaatgcataatatatgcaagattcggggttcgaatcccagccaccacaaaaaa 16752486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 596 - 645
Target Start/End: Original strand, 16089444 - 16089493
Alignment:
Q  596 gtcctcgtaagcgtagttcagttggcaaggacaatgcataatatctgcaa 645  Q
    |||||||||||| |||||||||||| | |||||||||||||||| |||||    
T  16089444 gtcctcgtaagcttagttcagttggtatggacaatgcataatatttgcaa 16089493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 595 - 663
Target Start/End: Original strand, 6624769 - 6624837
Alignment:
Q  595 tgtcctcgtaagcgtagttcagttggcaaggacaatgcataatatctgcaaaatccagggttcaaaccc 663  Q
    ||||||||| ||| ||| |||||||||| |||||||||||||||| |||||  ||| |||||| |||||    
T  6624769 tgtcctcgtgagcttagctcagttggcatggacaatgcataatatatgcaaggtccggggttcgaaccc 6624837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 595 - 679
Target Start/End: Original strand, 27219281 - 27219365
Alignment:
Q  595 tgtcctcgtaagcgtagttcagttggcaaggacaatgcataatatctgcaaaatccagggttcaaaccctagccaccgcaaaaaa 679  Q
    ||||||||| ||| ||| |||||| |||  |||||| |||||||| || || |||||||||||||||||  |||||||| |||||    
T  27219281 tgtcctcgtgagcttagctcagttagcagagacaatacataatatatgtaagatccagggttcaaaccccggccaccgccaaaaa 27219365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 596 - 679
Target Start/End: Original strand, 5485180 - 5485263
Alignment:
Q  596 gtcctcgtaagcgtagttcagttggcaaggacaatgcataatatctgcaaaatccagggttcaaaccctagccaccgcaaaaaa 679  Q
    |||||||| ||| ||| |||||||| | |||||||||||||||| |||||  ||| |||||| |||| | |||||| |||||||    
T  5485180 gtcctcgtgagcttagctcagttggtagggacaatgcataatatatgcaatgtccggggttctaaccttggccaccacaaaaaa 5485263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 596 - 663
Target Start/End: Original strand, 15889405 - 15889472
Alignment:
Q  596 gtcctcgtaagcgtagttcagttggcaaggacaatgcataatatctgcaaaatccagggttcaaaccc 663  Q
    |||||||| ||| ||| |||||||| | |||||||||||||||| |||||  || |||||||||||||    
T  15889405 gtcctcgtgagcttagctcagttggtagggacaatgcataatatatgcaaggtctagggttcaaaccc 15889472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 594 - 645
Target Start/End: Original strand, 42505864 - 42505915
Alignment:
Q  594 ttgtcctcgtaagcgtagttcagttggcaaggacaatgcataatatctgcaa 645  Q
    |||||||||||||| ||| |||||||| | |||||||||||||||| |||||    
T  42505864 ttgtcctcgtaagcttagctcagttggtatggacaatgcataatatatgcaa 42505915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 613 - 663
Target Start/End: Original strand, 5846040 - 5846090
Alignment:
Q  613 tcagttggcaaggacaatgcataatatctgcaaaatccagggttcaaaccc 663  Q
    |||||||| |||||||||||||||||| |||||| ||  ||||||||||||    
T  5846040 tcagttggtaaggacaatgcataatatatgcaaagtctggggttcaaaccc 5846090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 593 - 663
Target Start/End: Complemental strand, 22522871 - 22522801
Alignment:
Q  593 tttgtcctcgtaagcgtagttcagttggcaaggacaatgcataatatctgcaaaatccagggttcaaaccc 663  Q
    ||||||||||| ||| ||| || ||||| | |||||||||||||||| |||||  ||| ||||||||||||    
T  22522871 tttgtcctcgtgagcttagctcggttggtatggacaatgcataatatatgcaaggtccggggttcaaaccc 22522801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 596 - 645
Target Start/End: Complemental strand, 36321561 - 36321512
Alignment:
Q  596 gtcctcgtaagcgtagttcagttggcaaggacaatgcataatatctgcaa 645  Q
    |||||||| ||| ||| |||||||| |||||||||||||||||| |||||    
T  36321561 gtcctcgtgagcttagctcagttggtaaggacaatgcataatatatgcaa 36321512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 39; Significance: 0.000000000002; HSPs: 16)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 613 - 679
Target Start/End: Complemental strand, 51882250 - 51882184
Alignment:
Q  613 tcagttggcaaggacaatgcataatatctgcaaaatccagggttcaaaccctagccaccgcaaaaaa 679  Q
    |||||||| | |||||||||||||||| ||||| |||||||||||||||||  |||||| |||||||    
T  51882250 tcagttggtatggacaatgcataatatatgcaagatccagggttcaaaccccggccaccacaaaaaa 51882184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 595 - 679
Target Start/End: Complemental strand, 1149137 - 1149053
Alignment:
Q  595 tgtcctcgtaagcgtagttcagttggcaaggacaatgcataatatctgcaaaatccagggttcaaaccctagccaccgcaaaaaa 679  Q
    ||||||||| ||| ||| |||||||| |||||||||||||||||| |||||  || ||||||| |||||| | |||| |||||||    
T  1149137 tgtcctcgtgagcttagctcagttggtaaggacaatgcataatatatgcaaggtctagggttcgaaccctggacaccacaaaaaa 1149053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 593 - 645
Target Start/End: Original strand, 10926460 - 10926512
Alignment:
Q  593 tttgtcctcgtaagcgtagttcagttggcaaggacaatgcataatatctgcaa 645  Q
    ||||||||||||||| ||| |||||||| |||||||||||||||||| |||||    
T  10926460 tttgtcctcgtaagcttagctcagttggtaaggacaatgcataatatatgcaa 10926512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 596 - 679
Target Start/End: Original strand, 45431942 - 45432025
Alignment:
Q  596 gtcctcgtaagcgtagttcagttggcaaggacaatgcataatatctgcaaaatccagggttcaaaccctagccaccgcaaaaaa 679  Q
    ||||| || ||| ||| |||||||| | |||||||||||||||| |||||  ||| ||||||||||||| |||||| |||||||    
T  45431942 gtccttgttagcttagctcagttggtagggacaatgcataatatatgcaaggtccggggttcaaaccctggccaccacaaaaaa 45432025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 609 - 662
Target Start/End: Complemental strand, 759648 - 759595
Alignment:
Q  609 tagttcagttggcaaggacaatgcataatatctgcaaaatccagggttcaaacc 662  Q
    |||||||||||| | |||||||||||||||| |||||| | |||||||||||||    
T  759648 tagttcagttggtagggacaatgcataatatatgcaaagttcagggttcaaacc 759595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 615 - 676
Target Start/End: Original strand, 10102812 - 10102873
Alignment:
Q  615 agttggcaaggacaatgcataatatctgcaaaatccagggttcaaaccctagccaccgcaaa 676  Q
    |||||| | |||||||||||||||  |||||||||||||||||||||||  |||||| ||||    
T  10102812 agttggtagggacaatgcataatacatgcaaaatccagggttcaaaccccggccaccacaaa 10102873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 615 - 676
Target Start/End: Original strand, 10213735 - 10213796
Alignment:
Q  615 agttggcaaggacaatgcataatatctgcaaaatccagggttcaaaccctagccaccgcaaa 676  Q
    |||||| | |||||||||||||||  |||||||||||||||||||||||  |||||| ||||    
T  10213735 agttggtagggacaatgcataatacatgcaaaatccagggttcaaaccccggccaccacaaa 10213796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 613 - 653
Target Start/End: Complemental strand, 23525171 - 23525131
Alignment:
Q  613 tcagttggcaaggacaatgcataatatctgcaaaatccagg 653  Q
    ||||||||||||||||||||||||||| |||||||| ||||    
T  23525171 tcagttggcaaggacaatgcataatatatgcaaaattcagg 23525131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 592 - 679
Target Start/End: Original strand, 14827515 - 14827602
Alignment:
Q  592 atttgtcctcgtaagcgtagttcagttggcaaggacaatgcataatatctgcaaaatccagggttcaaaccctagccaccgcaaaaaa 679  Q
    |||||| ||||| ||| ||| |||||||| | ||||||||||||| || ||||| |||| ||||| ||||||  |||||| |||||||    
T  14827515 atttgttctcgtgagcttagctcagttggtatggacaatgcataaaatatgcaagatccggggtttaaaccccggccaccacaaaaaa 14827602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 596 - 679
Target Start/End: Complemental strand, 35863880 - 35863797
Alignment:
Q  596 gtcctcgtaagcgtagttcagttggcaaggacaatgcataatatctgcaaaatccagggttcaaaccctagccaccgcaaaaaa 679  Q
    |||||||||||| ||| |||||||| ||||||||| |||||||| |||||  ||  |||||||||||   |||||| |||||||    
T  35863880 gtcctcgtaagcttagctcagttggtaaggacaatacataatatatgcaaggtctggggttcaaacctcggccaccacaaaaaa 35863797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 624 - 671
Target Start/End: Original strand, 41817521 - 41817568
Alignment:
Q  624 ggacaatgcataatatctgcaaaatccagggttcaaaccctagccacc 671  Q
    |||||||||||||||| |||||  ||| ||||||||||||||||||||    
T  41817521 ggacaatgcataatatatgcaaggtccggggttcaaaccctagccacc 41817568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 590 - 656
Target Start/End: Original strand, 3100209 - 3100275
Alignment:
Q  590 tgatttgtcctcgtaagcgtagttcagttggcaaggacaatgcataatatctgcaaaatccagggtt 656  Q
    |||||||||||||| ||| ||| ||||||||   ||||||||||||| || |||||| |||||||||    
T  3100209 tgatttgtcctcgtgagcttagctcagttggtgtggacaatgcataacatatgcaaagtccagggtt 3100275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 613 - 663
Target Start/End: Complemental strand, 10922358 - 10922308
Alignment:
Q  613 tcagttggcaaggacaatgcataatatctgcaaaatccagggttcaaaccc 663  Q
    |||||||| | |||||||||||||||| ||||| |||| ||||||||||||    
T  10922358 tcagttggtagggacaatgcataatatatgcaagatccggggttcaaaccc 10922308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 595 - 645
Target Start/End: Complemental strand, 16980422 - 16980372
Alignment:
Q  595 tgtcctcgtaagcgtagttcagttggcaaggacaatgcataatatctgcaa 645  Q
    ||||||||| ||| ||| |||||||| |||||||||||||||||| |||||    
T  16980422 tgtcctcgtgagcttagctcagttggtaaggacaatgcataatatatgcaa 16980372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 593 - 663
Target Start/End: Complemental strand, 52904213 - 52904143
Alignment:
Q  593 tttgtcctcgtaagcgtagttcagttggcaaggacaatgcataatatctgcaaaatccagggttcaaaccc 663  Q
    ||||||||||| ||  ||| |||||||| |||||||||||||||||| |||||  ||  ||||||||||||    
T  52904213 tttgtcctcgtgaggttagctcagttggtaaggacaatgcataatatatgcaatgtcgggggttcaaaccc 52904143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 594 - 663
Target Start/End: Complemental strand, 16793043 - 16792974
Alignment:
Q  594 ttgtcctcgtaagcgtagttcagttggcaaggacaatgcataatatctgcaaaatccagggttcaaaccc 663  Q
    |||||||||| ||| |||  ||||||| |  ||||||||||||||| |||||  ||||||||||||||||    
T  16793043 ttgtcctcgtgagcttagcacagttggtatagacaatgcataatatatgcaaggtccagggttcaaaccc 16792974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 37; Significance: 0.00000000002; HSPs: 10)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 595 - 679
Target Start/End: Original strand, 13286124 - 13286207
Alignment:
Q  595 tgtcctcgtaagcgtagttcagttggcaaggacaatgcataatatctgcaaaatccagggttcaaaccctagccaccgcaaaaaa 679  Q
    ||||||||| ||| ||| |||||||| |  ||||||||||||||| ||||| |||| ||||||||||||  ||||||||||||||    
T  13286124 tgtcctcgtgagcttagctcagttggtatagacaatgcataatatatgcaagatcc-gggttcaaaccccggccaccgcaaaaaa 13286207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 595 - 671
Target Start/End: Original strand, 15020754 - 15020830
Alignment:
Q  595 tgtcctcgtaagcgtagttcagttggcaaggacaatgcataatatctgcaaaatccagggttcaaaccctagccacc 671  Q
    ||||||||| ||| || ||||||||| | |||||||| ||||||| ||||| |||| ||||||||||||| ||||||    
T  15020754 tgtcctcgttagcttaattcagttggtatggacaatgtataatatatgcaagatccggggttcaaaccctggccacc 15020830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 596 - 678
Target Start/End: Original strand, 18533663 - 18533745
Alignment:
Q  596 gtcctcgtaagcgtagttcagttggcaaggacaatgcataatatctgcaaaatccagggttcaaaccctagccaccgcaaaaa 678  Q
    |||||||||||| |   |||||||| ||| |||||||||||||| ||||| |||| |||||||||||| | ||||| ||||||    
T  18533663 gtcctcgtaagcttgactcagttggtaagaacaatgcataatatatgcaagatccggggttcaaaccccaaccaccacaaaaa 18533745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 595 - 679
Target Start/End: Original strand, 36781401 - 36781485
Alignment:
Q  595 tgtcctcgtaagcgtagttcagttggcaaggacaatgcataatatctgcaaaatccagggttcaaaccctagccaccgcaaaaaa 679  Q
    |||| |||| ||| ||| |||||||| ||||||||| |||||||| |||||| ||| ||||| ||||||   |||||||||||||    
T  36781401 tgtcatcgtgagcctagctcagttggtaaggacaatacataatatatgcaaagtccggggtttaaaccccgaccaccgcaaaaaa 36781485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 612 - 679
Target Start/End: Complemental strand, 7968991 - 7968925
Alignment:
Q  612 ttcagttggcaaggacaatgcataatatctgcaaaatccagggttcaaaccctagccaccgcaaaaaa 679  Q
    ||||||||| |||||||||||||||||| |||||  ||| ||||||||| || ||||||| |||||||    
T  7968991 ttcagttggtaaggacaatgcataatatatgcaaggtcc-gggttcaaatcccagccaccacaaaaaa 7968925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 595 - 681
Target Start/End: Complemental strand, 8999960 - 8999873
Alignment:
Q  595 tgtcctcgtaagcgtagttcagttggcaaggacaa-tgcataatatctgcaaaatccagggttcaaaccctagccaccgcaaaaaata 681  Q
    ||||||||| ||| ||| |||||||| |  ||||| |||||||||| |||||| ||||||||||||||||   ||||| |||||||||    
T  8999960 tgtcctcgtgagcttagctcagttggtagagacaaatgcataatatatgcaaagtccagggttcaaaccccgaccaccacaaaaaata 8999873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 596 - 663
Target Start/End: Original strand, 27587215 - 27587282
Alignment:
Q  596 gtcctcgtaagcgtagttcagttggcaaggacaatgcataatatctgcaaaatccagggttcaaaccc 663  Q
    |||||||| ||| ||| |||||||| ||||||||||||| |||| |||||  ||| ||||||||||||    
T  27587215 gtcctcgtgagcttagctcagttggtaaggacaatgcatgatatatgcaaggtccggggttcaaaccc 27587282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 593 - 679
Target Start/End: Original strand, 444405 - 444490
Alignment:
Q  593 tttgtcctcgtaagcgtagttcagttggcaaggacaatgcataatatctgcaaaatccagggttcaaaccctagccaccgcaaaaaa 679  Q
    |||||||||| |||| ||| ||| |||| |||||||||||||||||| |||||  ||| ||||| ||||||  |||||| |||||||    
T  444405 tttgtcctcg-aagcttagctcaattggtaaggacaatgcataatatatgcaaggtccggggtttaaaccccggccaccacaaaaaa 444490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 624 - 677
Target Start/End: Original strand, 8881297 - 8881350
Alignment:
Q  624 ggacaatgcataatatctgcaaaatccagggttcaaaccctagccaccgcaaaa 677  Q
    |||||||||||||||| |||||  ||||||||||||||||  |||||| |||||    
T  8881297 ggacaatgcataatatatgcaaggtccagggttcaaaccccggccaccacaaaa 8881350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 592 - 645
Target Start/End: Original strand, 23816780 - 23816833
Alignment:
Q  592 atttgtcctcgtaagcgtagttcagttggcaaggacaatgcataatatctgcaa 645  Q
    |||||||||||| ||| ||| |||||||| ||||| |||||||||||| |||||    
T  23816780 atttgtcctcgtgagcttagctcagttggtaaggataatgcataatatatgcaa 23816833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 36; Significance: 0.00000000009; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 593 - 664
Target Start/End: Original strand, 31971520 - 31971591
Alignment:
Q  593 tttgtcctcgtaagcgtagttcagttggcaaggacaatgcataatatctgcaaaatccagggttcaaaccct 664  Q
    ||||||||||||||| ||  |||||||| |||||||||||||||||| |||||  |||  ||||||||||||    
T  31971520 tttgtcctcgtaagcttaactcagttggtaaggacaatgcataatatatgcaaggtccgaggttcaaaccct 31971591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 596 - 671
Target Start/End: Complemental strand, 7083059 - 7082984
Alignment:
Q  596 gtcctcgtaagcgtagttcagttggcaaggacaatgcataatatctgcaaaatccagggttcaaaccctagccacc 671  Q
    |||||||| ||| ||| ||| |||| |||||||||||||||||| ||||| |||  | |||||||||| |||||||    
T  7083059 gtcctcgtgagcttagctcaattggtaaggacaatgcataatatatgcaagatctggagttcaaaccccagccacc 7082984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 624 - 663
Target Start/End: Complemental strand, 32524459 - 32524420
Alignment:
Q  624 ggacaatgcataatatctgcaaaatccagggttcaaaccc 663  Q
    |||||||||||||||| |||||| ||||||||||||||||    
T  32524459 ggacaatgcataatatatgcaaagtccagggttcaaaccc 32524420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 587 - 662
Target Start/End: Original strand, 33824866 - 33824941
Alignment:
Q  587 ttctgatttgtcctcgtaagcgtagttcagttggcaaggacaatgcataatatctgcaaaatccagggttcaaacc 662  Q
    |||||||||||| |||| | | ||| |||||||  |||||||||||||||||| |||||  ||| |||||||||||    
T  33824866 ttctgatttgtcttcgtgatcttagctcagttgataaggacaatgcataatatatgcaaggtccggggttcaaacc 33824941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 594 - 663
Target Start/End: Original strand, 9111039 - 9111108
Alignment:
Q  594 ttgtcctcgtaagcgtagttcagttggcaaggacaatgcataatatctgcaaaatccagggttcaaaccc 663  Q
    |||||||||| ||| |||||||||||| | | |||||||||||||| |||||  ||| |||||| |||||    
T  9111039 ttgtcctcgtgagcttagttcagttggtatgaacaatgcataatatatgcaaggtccggggttcgaaccc 9111108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 594 - 639
Target Start/End: Complemental strand, 13044683 - 13044638
Alignment:
Q  594 ttgtcctcgtaagcgtagttcagttggcaaggacaatgcataatat 639  Q
    ||||| |||| ||| |||||||||||||| ||||||||||||||||    
T  13044683 ttgtcgtcgttagcttagttcagttggcatggacaatgcataatat 13044638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 626 - 679
Target Start/End: Complemental strand, 18253376 - 18253323
Alignment:
Q  626 acaatgcataatatctgcaaaatccagggttcaaaccctagccaccgcaaaaaa 679  Q
    |||||||||||||| |||||  |||||||||||||||| | ||||| |||||||    
T  18253376 acaatgcataatatatgcaaggtccagggttcaaaccccatccaccacaaaaaa 18253323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 609 - 678
Target Start/End: Complemental strand, 26181769 - 26181700
Alignment:
Q  609 tagttcagttggcaaggacaatgcataatatctgcaaaatccagggttcaaaccctagccaccgcaaaaa 678  Q
    |||||||||| | |||||||||||||||||||| ||| ||| || |||| |||||| | |||| ||||||    
T  26181769 tagttcagttagtaaggacaatgcataatatcttcaagatctagagttcgaaccctggacaccacaaaaa 26181700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0011 (Bit Score: 34; Significance: 0.000000001; HSPs: 1)
Name: scaffold0011
Description:

Target: scaffold0011; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 594 - 663
Target Start/End: Original strand, 185255 - 185324
Alignment:
Q  594 ttgtcctcgtaagcgtagttcagttggcaaggacaatgcataatatctgcaaaatccagggttcaaaccc 663  Q
    |||||||||| ||| ||| |||||||| | ||||||||||||| || ||||| |||| ||||||||||||    
T  185255 ttgtcctcgtgagcttagctcagttggtatggacaatgcataaaatatgcaagatccggggttcaaaccc 185324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0005 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: scaffold0005
Description:

Target: scaffold0005; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 596 - 663
Target Start/End: Original strand, 239801 - 239868
Alignment:
Q  596 gtcctcgtaagcgtagttcagttggcaaggacaatgcataatatctgcaaaatccagggttcaaaccc 663  Q
    |||||||| ||  ||| |||||||| |||||||||||||||||| |||||| ||| | ||||||||||    
T  239801 gtcctcgtgagtttagctcagttggtaaggacaatgcataatatatgcaaagtccggagttcaaaccc 239868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0238 (Bit Score: 31; Significance: 0.00000009; HSPs: 1)
Name: scaffold0238
Description:

Target: scaffold0238; HSP #1
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 613 - 663
Target Start/End: Original strand, 25400 - 25450
Alignment:
Q  613 tcagttggcaaggacaatgcataatatctgcaaaatccagggttcaaaccc 663  Q
    |||||||| |||||||||||||||||| |||||  |||||||||| |||||    
T  25400 tcagttggtaaggacaatgcataatatatgcaaggtccagggttcgaaccc 25450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0040 (Bit Score: 31; Significance: 0.00000009; HSPs: 1)
Name: scaffold0040
Description:

Target: scaffold0040; HSP #1
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 593 - 679
Target Start/End: Original strand, 56775 - 56860
Alignment:
Q  593 tttgtcctcgtaagcgtagttcagttggcaaggacaatgcataatatctgcaaaatccagggttcaaaccctagccaccgcaaaaaa 679  Q
    ||||||||||| ||| ||| |||||||| | |||||||| ||||||| |||||  |||| | ||||||||| ||||||| |||||||    
T  56775 tttgtcctcgtgagcttagctcagttggtatggacaatgtataatatatgcaaggtcca-gtttcaaaccccagccaccacaaaaaa 56860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University