View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5490_low_12 (Length: 255)
Name: NF5490_low_12
Description: NF5490
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5490_low_12 |
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Alignment Details
Target: chr4 (Bit Score: 233; Significance: 1e-129; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 233; E-Value: 1e-129
Query Start/End: Original strand, 1 - 237
Target Start/End: Original strand, 35035843 - 35036079
Alignment:
| Q |
1 |
cacctccacctcttaggtggttcccaacaaccttatatcaccttgggaaacttagccgacaaatacggagccatcttcaccgtgcgtttaggtgttcatc |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
35035843 |
cacctccacctcttaggtggttcccaacaaccttatatcaccttgggaaacttagccgacaaatacggagccatcttcacagtgcgtttaggtgttcatc |
35035942 |
T |
|
| Q |
101 |
gaactttagttgttagcagttgggaaattgctagacagtgtttcactgtaaacgacaaagcctttgcttctcgtcccaaatctatagcctttgaaatcat |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35035943 |
gaactttagttgttagcagttgggaaattgctagacagtgtttcactgtaaacgacaaagcctttgcttctcgtcccaaatctatagcctttgaaatcat |
35036042 |
T |
|
| Q |
201 |
gggttataactcttccatgtttggtatgagtccctac |
237 |
Q |
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| T |
35036043 |
gggttataactcttccatgtttggtatgagtccctac |
35036079 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 129; E-Value: 7e-67
Query Start/End: Original strand, 1 - 233
Target Start/End: Original strand, 35019644 - 35019876
Alignment:
| Q |
1 |
cacctccacctcttaggtggttcccaacaaccttatatcaccttgggaaacttagccgacaaatacggagccatcttcaccgtgcgtttaggtgttcatc |
100 |
Q |
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|||||||||||||||||||||||||||| |||| | ||||||| |||||||||||||||||||||||| ||||||||||||| |||||||||||||| |
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| T |
35019644 |
cacctccacctcttaggtggttcccaaccacctcacgtcaccttaggaaacttagccgacaaatacggacccatcttcaccgttcgtttaggtgttcaca |
35019743 |
T |
|
| Q |
101 |
gaactttagttgttagcagttgggaaattgctagacagtgtttcactgtaaacgacaaagcctttgcttctcgtcccaaatctatagcctttgaaatcat |
200 |
Q |
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| T |
35019744 |
aaaccttagtagtaagcagttatgaaatggtgaaacagtgttttaccgtaaacgacaaaacttttgcttcacgtcctaaatctatagcctttgaaatcat |
35019843 |
T |
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| Q |
201 |
gggttataactcttccatgtttggtatgagtcc |
233 |
Q |
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||||||||||||||||||||||||| ||||||| |
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| T |
35019844 |
gggttataactcttccatgtttggtttgagtcc |
35019876 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 1 - 219
Target Start/End: Original strand, 35044004 - 35044222
Alignment:
| Q |
1 |
cacctccacctcttaggtggttcccaacaaccttatatcaccttgggaaacttagccgacaaatacggagccatcttcaccgtgcgtttaggtgttcatc |
100 |
Q |
| |
|
|||||||||||||||||||| ||||| | |||| || ||||||| || || ||||||| ||||||||| | ||||||||| | ||||| |||||||| |
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| T |
35044004 |
cacctccacctcttaggtggatcccagccacctcatgtcaccttagggaagctagccgataaatacggacctatcttcacctttcgttttggtgttcaca |
35044103 |
T |
|
| Q |
101 |
gaactttagttgttagcagttgggaaattgctagacagtgtttcactgtaaacgacaaagcctttgcttctcgtcccaaatctatagcctttgaaatcat |
200 |
Q |
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||| ||||| | |||||||| ||||| || | ||| || |||||||||||||| | ||||||||||||||||||||||||||||||||||||||| | |
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| T |
35044104 |
aaacactagttataagcagttgtgaaatggcgaaacaatgcttcactgtaaacgatagagcctttgcttctcgtcccaaatctatagcctttgaaatttt |
35044203 |
T |
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| Q |
201 |
gggttataactcttccatg |
219 |
Q |
| |
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||| ||||||| ||||||| |
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| T |
35044204 |
gggatataacttttccatg |
35044222 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 1 - 219
Target Start/End: Original strand, 35029735 - 35029954
Alignment:
| Q |
1 |
cacctccacctcttaggtggttcccaacaaccttatatcaccttgggaaacttagccgacaaatacggagccat-cttcaccgtgcgtttaggtgttcat |
99 |
Q |
| |
|
|||||||||||||||||||| ||||||| |||| | | ||||| |||||||||||||||||||||||| |||| ||||||||| |||||||||||||| |
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| T |
35029735 |
cacctccacctcttaggtgggtcccaaccacctcacgttaccttaggaaacttagccgacaaatacggacccatccttcaccgttcgtttaggtgttcac |
35029834 |
T |
|
| Q |
100 |
cgaactttagttgttagcagttgggaaattgctagacagtgtttcactgtaaacgacaaagcctttgcttctcgtcccaaatctatagcctttgaaatca |
199 |
Q |
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||| |||||||| ||||||| ||||| | | ||| |||||||| ||||| |||||| | |||||||| ||||| |||||| |||||||||||| |
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| T |
35029835 |
aaaaccttagttgtaagcagttatgaaatggtgaaacaatgtttcaccgtaaatgacaaaacttttgcttcacgtccgaaatctgcagcctttgaaattt |
35029934 |
T |
|
| Q |
200 |
tgggttataactcttccatg |
219 |
Q |
| |
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| || ||||||| ||||||| |
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| T |
35029935 |
tagggtataacttttccatg |
35029954 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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