View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5490_low_13 (Length: 251)
Name: NF5490_low_13
Description: NF5490
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5490_low_13 |
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Alignment Details
Target: chr8 (Bit Score: 241; Significance: 1e-133; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 1 - 241
Target Start/End: Complemental strand, 37672466 - 37672226
Alignment:
| Q |
1 |
aaaagaaaggaagtgaagtgagtaaagtgaagatgatgaagtttatgtttttgaaatagatggttagagtttcacccaggatatctaagacatcaatgtt |
100 |
Q |
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| T |
37672466 |
aaaagaaaggaagtgaagtgagtaaagtgaagatgatgaagtttatgtttttgaaatagatggttagagtttcacccaggatatctaagacatcaatgtt |
37672367 |
T |
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| Q |
101 |
cttcttctgcttaataacatgtttggcttcactctccattctagattggttgaatatgagaagctcaatgtagattctaatttatagtaaataattagat |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37672366 |
cttcttctgcttaataacatgtttggcttcactctccattctagattggttgaatatgagaagctcaatgtagattctaatttatagtaaataattagat |
37672267 |
T |
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| Q |
201 |
cttgtatcttgattcttaccttccaggaaatacaccctttg |
241 |
Q |
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| T |
37672266 |
cttgtatcttgattcttaccttccaggaaatacaccctttg |
37672226 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 7 - 72
Target Start/End: Complemental strand, 26234779 - 26234714
Alignment:
| Q |
7 |
aaggaagtgaagtgagtaaagtgaagatgatgaagtttatgtttttgaaatagatggttagagttt |
72 |
Q |
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||||||| |||||||| ||||||||||| |||||||| || ||||||||||||||||||| ||||| |
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| T |
26234779 |
aaggaagagaagtgagaaaagtgaagattatgaagttgatatttttgaaatagatggttacagttt |
26234714 |
T |
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