View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5490_low_14 (Length: 250)
Name: NF5490_low_14
Description: NF5490
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5490_low_14 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 116; Significance: 4e-59; HSPs: 7)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 116; E-Value: 4e-59
Query Start/End: Original strand, 13 - 128
Target Start/End: Complemental strand, 1451614 - 1451499
Alignment:
| Q |
13 |
aatatcatatctgattcacaacttacaagtactgcaaatttgagagaccccctaggcttgaaaccagtattccagaaaggtttgcatttccaagatcgct |
112 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1451614 |
aatatcatatctgattcacaacttacaagtactgcaaatttgagagaccccctaggcttgaaaccagtattccagaaaggtttgcatttccaagatcgct |
1451515 |
T |
|
| Q |
113 |
gtccaaatacaacaaa |
128 |
Q |
| |
|
|||||||||||||||| |
|
|
| T |
1451514 |
gtccaaatacaacaaa |
1451499 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 149 - 232
Target Start/End: Complemental strand, 1451475 - 1451392
Alignment:
| Q |
149 |
acaactcattacgttgacaaaattcataaaatcactgataaaaatgacataacaacttacacacggattactctatcaccgctg |
232 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1451475 |
acaattcattacgttgacaaaattcataaaatcactgataaaaatgacataacaacttacacacggattactctatcaccgctg |
1451392 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 13 - 124
Target Start/End: Complemental strand, 1445438 - 1445327
Alignment:
| Q |
13 |
aatatcatatctgattcacaacttacaagtactgcaaatttgagagaccccctaggcttgaaaccagtattccagaaaggtttgcatttccaagatcgct |
112 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||||||||||| | || || |||||||||| | |||||||||||| ||||| ||||||| || |
|
|
| T |
1445438 |
aatatcatatctgattcacaacttacaagtactccaaatttgagagaacaccaagatttgaaaccagattaccagaaaggttttcatttgcaagatcact |
1445339 |
T |
|
| Q |
113 |
gtccaaatacaa |
124 |
Q |
| |
|
|||||||||||| |
|
|
| T |
1445338 |
gtccaaatacaa |
1445327 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 154 - 228
Target Start/End: Complemental strand, 1445289 - 1445214
Alignment:
| Q |
154 |
tcattacgttgacaaa-attcataaaatcactgataaaaatgacataacaacttacacacggattactctatcacc |
228 |
Q |
| |
|
||||||| |||||||| |||||||||||||| | ||||||||||||||| |||||||| |||||||||||| |||| |
|
|
| T |
1445289 |
tcattacattgacaaagattcataaaatcacaggtaaaaatgacataacgacttacacccggattactctaccacc |
1445214 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 18 - 120
Target Start/End: Complemental strand, 1425835 - 1425733
Alignment:
| Q |
18 |
catatctgattcacaacttacaagtactgcaaatttgagagaccccctaggcttgaaaccagtattccagaaaggtttgcatttccaagatcgctgtcca |
117 |
Q |
| |
|
||||||||| ||||||||||||||||||| |||||||||||| | || || |||||||||| | |||||||| | |||||||||||||| |||| || |
|
|
| T |
1425835 |
catatctgaatcacaacttacaagtactgtaaatttgagagatcacccagttgtgaaaccagtgtaccagaaagttccgcatttccaagatcactgttca |
1425736 |
T |
|
| Q |
118 |
aat |
120 |
Q |
| |
|
||| |
|
|
| T |
1425735 |
aat |
1425733 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 18 - 120
Target Start/End: Complemental strand, 1432918 - 1432816
Alignment:
| Q |
18 |
catatctgattcacaacttacaagtactgcaaatttgagagaccccctaggcttgaaaccagtattccagaaaggtttgcatttccaagatcgctgtcca |
117 |
Q |
| |
|
||||||||| ||||| |||||||||||||||||||||| ||| | || | |||||| ||| | |||||||||||||||||| ||||||| ||||||| |
|
|
| T |
1432918 |
catatctgagtcacagcttacaagtactgcaaatttgaaagatcaccaaattttgaaatcagggtaccagaaaggtttgcattttcaagatcactgtcca |
1432819 |
T |
|
| Q |
118 |
aat |
120 |
Q |
| |
|
||| |
|
|
| T |
1432818 |
aat |
1432816 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 26 - 120
Target Start/End: Complemental strand, 1438669 - 1438575
Alignment:
| Q |
26 |
attcacaacttacaagtactgcaaatttgagagaccccctaggcttgaaaccagtattccagaaaggtttgcatttccaagatcgctgtccaaat |
120 |
Q |
| |
|
||||||||||||||| | || |||||||||||| | || || |||||||||| | |||||||||||||||||||||||||| || ||||||| |
|
|
| T |
1438669 |
attcacaacttacaatttatgtaaatttgagagatcgccaagttgtgaaaccagtgtaccagaaaggtttgcatttccaagatccctatccaaat |
1438575 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University