View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5490_low_16 (Length: 239)
Name: NF5490_low_16
Description: NF5490
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5490_low_16 |
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Alignment Details
Target: chr8 (Bit Score: 223; Significance: 1e-123; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 1 - 223
Target Start/End: Original strand, 37672471 - 37672693
Alignment:
| Q |
1 |
catggtttacttcgaaacattgttccaacaaactcttgttcaaactccaaaaatcatcttacctttacctttccatgaaagaaatcaacttcgtttctat |
100 |
Q |
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| T |
37672471 |
catggtttacttcgaaacattgttccaacaaactcttgttcaaactccaaaaatcatcttacctttacctttccatgaaagaaatcaacttcgtttctat |
37672570 |
T |
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| Q |
101 |
tcagttattgatatttataatggcccaagttttagcaaagactatctacctcttttgattcaacttggatttatttacactatccctcttcatttcctag |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37672571 |
tcagttattgatatttataatggcccaagttttagcaaagactatctacctcttttgattcaacttggatttatttacactatccctcttcatttcctag |
37672670 |
T |
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| Q |
201 |
aattctgttctaaagtattaact |
223 |
Q |
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||||||||||||||||||||||| |
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| T |
37672671 |
aattctgttctaaagtattaact |
37672693 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 147 - 211
Target Start/End: Original strand, 26234936 - 26235000
Alignment:
| Q |
147 |
tacctcttttgattcaacttggatttatttacactatccctcttcatttcctagaattctgttct |
211 |
Q |
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| T |
26234936 |
tacctcttttgattcaacttggattcatttacactgtccctcttcatgttcttgaattcttttct |
26235000 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 70
Target Start/End: Original strand, 26234790 - 26234859
Alignment:
| Q |
1 |
catggtttacttcgaaacattgttccaacaaactcttgttcaaactccaaaaatcatcttacctttacct |
70 |
Q |
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| T |
26234790 |
catgatttactttgaaacattgttccaacaaaccctacttctatctccacaaatcatctcatctttacct |
26234859 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 153 - 211
Target Start/End: Original strand, 17845190 - 17845248
Alignment:
| Q |
153 |
ttttgattcaacttggatttatttacactatccctcttcatttcctagaattctgttct |
211 |
Q |
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||||| ||||||||||||| |||||| | ||||||||||| | ||||||||||||||| |
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| T |
17845190 |
ttttggttcaacttggattcatttacgttgtccctcttcatgttctagaattctgttct |
17845248 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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