View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5490_low_2 (Length: 491)
Name: NF5490_low_2
Description: NF5490
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5490_low_2 |
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Alignment Details
Target: chr7 (Bit Score: 412; Significance: 0; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 412; E-Value: 0
Query Start/End: Original strand, 13 - 475
Target Start/End: Complemental strand, 18575636 - 18575174
Alignment:
| Q |
13 |
aatatcttgcaaaccaagcaataggatgatcaacaatatcttaaaaaatgatcatgacccagaagctgaattagaatgaaaacaatcaaaatctaatctt |
112 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||| |
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| T |
18575636 |
aatatcttgcaaaccaagcaataggatgatcaacaatatcttaaaaaatgatcatgacccaggagctgaattacaatgaaaacaatcaaaatctaatctt |
18575537 |
T |
|
| Q |
113 |
ttttggagaatcaatacnnnnnnnnnnnnncatgattcattctcaacaacaataagatgataaatttacttgtgattttaagctgcgaagctcaacttgt |
212 |
Q |
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||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
18575536 |
ttttggagaatcaatacaaaaagtaaaaaacatgattcattctcaacaacaataagatgataaatttacttgtgattttaagctgcgaagctcaacttgt |
18575437 |
T |
|
| Q |
213 |
gtaaactggttttgaagccatggatctgaaactataataccccaatgactagacatagctataagactataactaaaaatctattattgaattatgttac |
312 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
18575436 |
gtaaactggttttgaagccatggatctgaaactataataccccaatgactagacatagctataagactataactaaaaatctattattgaattatgttac |
18575337 |
T |
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| Q |
313 |
ttgtgtatcttttgtgcttgttcttgcttgcaccaatgcaatgagtctatgtatgtatctgaattttatctaaaagttaataaaaaagatgaaagtgtgt |
412 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
18575336 |
ttgtgtatcttttgtgcttgttcttgcttgcaccaatgcaatgagtctatgtatgtatctgaattttatctaaaacttaataaaaaagatgaaagtgtgt |
18575237 |
T |
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| Q |
413 |
tagagaaggagatggaacaaggacaccattttgggaccgggaagagctgtcatagttcaaagt |
475 |
Q |
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| T |
18575236 |
tagagaaggagatggaacaaggacaccattttgggaccgggaagagctgtcatagttcaaagt |
18575174 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 98; E-Value: 5e-48
Query Start/End: Original strand, 13 - 126
Target Start/End: Complemental strand, 18575787 - 18575674
Alignment:
| Q |
13 |
aatatcttgcaaaccaagcaataggatgatcaacaatatcttaaaaaatgatcatgacccagaagctgaattagaatgaaaacaatcaaaatctaatctt |
112 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||| |
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| T |
18575787 |
aatatcttgcaaaccaagcaataggatgatcaacaatatcttaaaaaatgatcatgaccaagaagctgaattgcaatgaaaacaatcaaaatctaatctt |
18575688 |
T |
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| Q |
113 |
ttttggagaatcaa |
126 |
Q |
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||||||| |||||| |
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| T |
18575687 |
ttttggaaaatcaa |
18575674 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 21 - 116
Target Start/End: Complemental strand, 18575931 - 18575836
Alignment:
| Q |
21 |
gcaaaccaagcaataggatgatcaacaatatcttaaaaaatgatcatgacccagaagctgaattagaatgaaaacaatcaaaatctaatctttttt |
116 |
Q |
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| T |
18575931 |
gcaaaccaaacaatagtatgataaaaaatatcttaaaaaatgatcatgatcaagaagctgaatttcaatgaaaagaatcaaaatctagtctttttt |
18575836 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 54 - 129
Target Start/End: Complemental strand, 18576060 - 18575985
Alignment:
| Q |
54 |
taaaaaatgatcatgacccagaagctgaattagaatgaaaacaatcaaaatctaatcttttttggagaatcaatac |
129 |
Q |
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||||||||||||||| | |||||||| |||| | |||||| ||| |||||| ||||||| ||||| ||||||||| |
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| T |
18576060 |
taaaaaatgatcatggctcagaagctcaattgcattgaaaagaataaaaatccaatctttcttggaaaatcaatac |
18575985 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 178 - 269
Target Start/End: Original strand, 3093327 - 3093418
Alignment:
| Q |
178 |
ttacttgtgattttaagctgcgaagctcaacttgtgtaaactggttttgaagccatggatctgaaactataataccccaatgactagacata |
269 |
Q |
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|||| |||| ||| ||||| | ||| ||||||||||| ||||| || ||||| |||||||||||||| | ||| ||||| |||| ||||||| |
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| T |
3093327 |
ttacatgtgttttcaagcttctaagttcaacttgtgtgaactgattctgaagacatggatctgaaacaagaattccccagtgaccagacata |
3093418 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 178 - 230
Target Start/End: Original strand, 41133403 - 41133455
Alignment:
| Q |
178 |
ttacttgtgattttaagctgcgaagctcaacttgtgtaaactggttttgaagc |
230 |
Q |
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|||||| |||||| | ||||||||| ||||| |||||||||||| |||||||| |
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| T |
41133403 |
ttacttttgatttaaggctgcgaagttcaacctgtgtaaactggctttgaagc |
41133455 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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