View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5490_low_3 (Length: 487)
Name: NF5490_low_3
Description: NF5490
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5490_low_3 |
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Alignment Details
Target: chr3 (Bit Score: 383; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 383; E-Value: 0
Query Start/End: Original strand, 1 - 471
Target Start/End: Complemental strand, 34697850 - 34697385
Alignment:
| Q |
1 |
gttcacttcatggtcatttgacttgagtagtaatctttgtcat---aaataataggttacaaatgatatcactaaatgctgctcctagagaatgatgcta |
97 |
Q |
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|||||||||||||||||||||||||||||||| |||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34697850 |
gttcacttcatggtcatttgacttgagtagtagtctttgtcatcataaataaaaggttacaaatgatatcactaaatgctgctcctagagaatgatgcta |
34697751 |
T |
|
| Q |
98 |
gaatttacaacggtggggatggtttggttgcaataaaattgagataagatattgtacactttaaaggtcatggtacatattgtataaaacacacacaaag |
197 |
Q |
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| T |
34697750 |
gaatttacaacggtggggatggtt-----gcaataaa-ttgagataagatattgtacactttagaggtcttggtacatattgtataaaacacacacaaag |
34697657 |
T |
|
| Q |
198 |
tagtacaagtttagattgacatatcacaatgagacactatgatcttagcaaaagctatacactttcgagcttcacaaaatcacgatgtcaatgtaatttt |
297 |
Q |
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|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
34697656 |
ta---caagtttagattgacatatcacaatgagacactatgatcttagcaaaagctatacactttcgagcttcacaaaatcacgatgccaatgtaatttt |
34697560 |
T |
|
| Q |
298 |
atcgaacttaaagtcaatccaaatatgctaaattttattcaaatcaagaaacaagcacaaggtttgaaaaataggagttatatatatattgtttagatga |
397 |
Q |
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||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
34697559 |
atcgaacttaaagtcaatccaaatatgttaaattttattcaaatcaagaaacaagcacaaggtttgaaacataggagttatatatatattgtttagatga |
34697460 |
T |
|
| Q |
398 |
tttcgaagctcaacataacattt-ggtttattttccttttgcagttgcttgagatgctatcagaggagtatggtg |
471 |
Q |
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||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34697459 |
tttcgaagctcaacataacatttcggtttattttccttttgcagttgcttgagatgctatcagaggagtatggtg |
34697385 |
T |
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