View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5490_low_4 (Length: 457)
Name: NF5490_low_4
Description: NF5490
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5490_low_4 |
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Alignment Details
Target: chr7 (Bit Score: 378; Significance: 0; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 378; E-Value: 0
Query Start/End: Original strand, 13 - 441
Target Start/End: Complemental strand, 18575602 - 18575174
Alignment:
| Q |
13 |
aatatcttaaaaaatgatcatgacccagaagctgaattagaatgaaaacaatcaaaatctaatcttttttggagaatcaatacnnnnnnnnnnnnncatg |
112 |
Q |
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|||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
18575602 |
aatatcttaaaaaatgatcatgacccaggagctgaattacaatgaaaacaatcaaaatctaatcttttttggagaatcaatacaaaaagtaaaaaacatg |
18575503 |
T |
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| Q |
113 |
attcattctcaacaacaataagatgataaatttacttgtgattttaagctgcgaagctcaacttgtgtaaactggttttgaagccatggatctgaaacta |
212 |
Q |
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| T |
18575502 |
attcattctcaacaacaataagatgataaatttacttgtgattttaagctgcgaagctcaacttgtgtaaactggttttgaagccatggatctgaaacta |
18575403 |
T |
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| Q |
213 |
taataccccaatgactagacatagctataagactataactaaaaatctattattgaattatgttacttgtgtatcttttgtgcttgttcttgcttgcacc |
312 |
Q |
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| T |
18575402 |
taataccccaatgactagacatagctataagactataactaaaaatctattattgaattatgttacttgtgtatcttttgtgcttgttcttgcttgcacc |
18575303 |
T |
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| Q |
313 |
aatgcaatgagtctatgtatgtatctgaattttatctaaaagttaataaaaaagatgaaagtgtgttagagaaggagatggaacaaggacaccattttgg |
412 |
Q |
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| T |
18575302 |
aatgcaatgagtctatgtatgtatctgaattttatctaaaacttaataaaaaagatgaaagtgtgttagagaaggagatggaacaaggacaccattttgg |
18575203 |
T |
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| Q |
413 |
gaccgggaagagctgtcatagttcaaagt |
441 |
Q |
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| T |
18575202 |
gaccgggaagagctgtcatagttcaaagt |
18575174 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 13 - 92
Target Start/End: Complemental strand, 18575753 - 18575674
Alignment:
| Q |
13 |
aatatcttaaaaaatgatcatgacccagaagctgaattagaatgaaaacaatcaaaatctaatcttttttggagaatcaa |
92 |
Q |
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| T |
18575753 |
aatatcttaaaaaatgatcatgaccaagaagctgaattgcaatgaaaacaatcaaaatctaatcttttttggaaaatcaa |
18575674 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 13 - 82
Target Start/End: Complemental strand, 18575905 - 18575836
Alignment:
| Q |
13 |
aatatcttaaaaaatgatcatgacccagaagctgaattagaatgaaaacaatcaaaatctaatctttttt |
82 |
Q |
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||||||||||||||||||||||| | |||||||||||| |||||||| |||||||||||| |||||||| |
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| T |
18575905 |
aatatcttaaaaaatgatcatgatcaagaagctgaatttcaatgaaaagaatcaaaatctagtctttttt |
18575836 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 20 - 95
Target Start/End: Complemental strand, 18576060 - 18575985
Alignment:
| Q |
20 |
taaaaaatgatcatgacccagaagctgaattagaatgaaaacaatcaaaatctaatcttttttggagaatcaatac |
95 |
Q |
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||||||||||||||| | |||||||| |||| | |||||| ||| |||||| ||||||| ||||| ||||||||| |
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| T |
18576060 |
taaaaaatgatcatggctcagaagctcaattgcattgaaaagaataaaaatccaatctttcttggaaaatcaatac |
18575985 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 144 - 235
Target Start/End: Original strand, 3093327 - 3093418
Alignment:
| Q |
144 |
ttacttgtgattttaagctgcgaagctcaacttgtgtaaactggttttgaagccatggatctgaaactataataccccaatgactagacata |
235 |
Q |
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|||| |||| ||| ||||| | ||| ||||||||||| ||||| || ||||| |||||||||||||| | ||| ||||| |||| ||||||| |
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| T |
3093327 |
ttacatgtgttttcaagcttctaagttcaacttgtgtgaactgattctgaagacatggatctgaaacaagaattccccagtgaccagacata |
3093418 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 144 - 196
Target Start/End: Original strand, 41133403 - 41133455
Alignment:
| Q |
144 |
ttacttgtgattttaagctgcgaagctcaacttgtgtaaactggttttgaagc |
196 |
Q |
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|||||| |||||| | ||||||||| ||||| |||||||||||| |||||||| |
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| T |
41133403 |
ttacttttgatttaaggctgcgaagttcaacctgtgtaaactggctttgaagc |
41133455 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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