View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5490_low_6 (Length: 436)
Name: NF5490_low_6
Description: NF5490
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5490_low_6 |
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Alignment Details
Target: chr2 (Bit Score: 357; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 357; E-Value: 0
Query Start/End: Original strand, 10 - 387
Target Start/End: Complemental strand, 1581286 - 1580901
Alignment:
| Q |
10 |
attatactgataacattctataacatttcctggcttctccttacacggtccatattcatttatcgcccaaggacattctttctcgcaatcgtcgtcatct |
109 |
Q |
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| T |
1581286 |
attatactgataacattctataacatttcctggcttctccttacacggtccatattcatttatcgcccaaggacattctttctcgcaatcgtcgtcatct |
1581187 |
T |
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| Q |
110 |
cgtttttgatcataaacgacaaaatatttaaatccatgaa--------acactacaaaagtataatttatttggtagaagaaaggtagtcttaaaactga |
201 |
Q |
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| T |
1581186 |
cgtttttgatcataaacgacaaaatatttaaatccatgaatccatgaaacactacaaaagtataatttatttggtagaagaaaggtagtcttaaaactga |
1581087 |
T |
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| Q |
202 |
agctgtaaacttccttatattttagtgttttattcccaaaatcgtcatgattatctttacaatgaacatcaacttgaagagagttggtgaagttgttggt |
301 |
Q |
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| T |
1581086 |
agctgtaaacttccttatattttagtgttttattcccaaaatcgtcatgattatctttacaatgaacatcaacttgaagagagttggtgaagttgttggt |
1580987 |
T |
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| Q |
302 |
aatactcacatgtactgtggtaggaaaaggcttaaagctttcaacatccttgaactgcaaaacaacaaaaattgttagtaacattg |
387 |
Q |
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| T |
1580986 |
aatactcacatgtactgtggtaggaaaaggcttaaagctttcaacatccttgaactgcaaaacaacaaaaattgttagtaacattg |
1580901 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 337 - 402
Target Start/End: Complemental strand, 29308678 - 29308613
Alignment:
| Q |
337 |
agctttcaacatccttgaactgcaaaacaacaaaaattgttagtaacattgaaacccataacacaa |
402 |
Q |
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| T |
29308678 |
agctttcagcatctttgaactggaaagcaagaaaaattgttagtaacatagaaactaataacacaa |
29308613 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 339 - 409
Target Start/End: Complemental strand, 34182085 - 34182015
Alignment:
| Q |
339 |
ctttcaacatccttgaactgcaaaacaacaaaaattgttagtaacattgaaacccataacacaattttgga |
409 |
Q |
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| T |
34182085 |
ctttcaccatcctgaaactgcaaagcaacaaaaattgttagcaacatggaaattgaaaacacaattttgga |
34182015 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 352 - 390
Target Start/End: Complemental strand, 20906814 - 20906776
Alignment:
| Q |
352 |
tgaactgcaaaacaacaaaaattgttagtaacattgaaa |
390 |
Q |
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| T |
20906814 |
tgaactgcaaaacaacaaaaataattagtaacattgaaa |
20906776 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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