View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5490_low_7 (Length: 366)
Name: NF5490_low_7
Description: NF5490
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5490_low_7 |
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Alignment Details
Target: chr3 (Bit Score: 334; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 334; E-Value: 0
Query Start/End: Original strand, 12 - 353
Target Start/End: Original strand, 34697980 - 34698321
Alignment:
| Q |
12 |
aagacaagagagaattttagaagacttacatgaataacgtcaactttaacaccgtcaatgcccaccgattccaaatgagagtgaagcccttcaaacattt |
111 |
Q |
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| T |
34697980 |
aagacaagagagaattttagaagacttacatgaataacgtcaactttaacaccgtcaatgcccaccgattccaaatgagagtgaagcccttcaaacattt |
34698079 |
T |
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| Q |
112 |
cttgggctaaatttggtggcactaagcctacaccattgttaacaatcttatccaccgctaaatcctccattgtcatcttcagccccggagacagcttcgg |
211 |
Q |
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| T |
34698080 |
cttgggctaaatttggtggcactaaccctacaccattgttaacaatcttatccaccgctaaatcctccattgtcatcttcagccccggagacagcttcgg |
34698179 |
T |
|
| Q |
212 |
agtaacaaccttagcttcgggcatgcccttcactttaggtctaaccccaccccaatacccacaaagtgcatgccaaacataaacattctcaacactctta |
311 |
Q |
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| T |
34698180 |
agtaacaaccttagcttcgggcatgcccttcactttaggtctaaccccaccccaatacccacaaagtgcatgccaaacataaacattctcaacactctta |
34698279 |
T |
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| Q |
312 |
aactcttccttcaagtccctaataaaaccacccatgcctttg |
353 |
Q |
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| T |
34698280 |
aactcttccttcaagtccctaataaaaccacccatacctttg |
34698321 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 37; Significance: 0.000000000008; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 249 - 297
Target Start/End: Original strand, 43563873 - 43563921
Alignment:
| Q |
249 |
ggtctaaccccaccccaatacccacaaagtgcatgccaaacataaacat |
297 |
Q |
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| T |
43563873 |
ggtctcacaccaccccaataaccacaaagtgcatgccaaacataaacat |
43563921 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 248 - 297
Target Start/End: Original strand, 36431851 - 36431900
Alignment:
| Q |
248 |
aggtctaaccccaccccaatacccacaaagtgcatgccaaacataaacat |
297 |
Q |
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| T |
36431851 |
aggtctcacaccaccccaagcaccacaaagtgcatgccaaacataaacat |
36431900 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 246 - 295
Target Start/End: Original strand, 43639547 - 43639596
Alignment:
| Q |
246 |
ttaggtctaaccccaccccaatacccacaaagtgcatgccaaacataaac |
295 |
Q |
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| T |
43639547 |
ttaggcctaatcccaccccaatacccacaaaaagcatgccacacataaac |
43639596 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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