View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5490_low_8 (Length: 355)
Name: NF5490_low_8
Description: NF5490
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5490_low_8 |
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Alignment Details
Target: chr3 (Bit Score: 313; Significance: 1e-176; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 313; E-Value: 1e-176
Query Start/End: Original strand, 21 - 345
Target Start/End: Complemental strand, 29331941 - 29331617
Alignment:
| Q |
21 |
ggtttctcttacacaggcctaaattttaatgacacggccgagtttgaatagtttcaacccatataaactttctctgatcaatcaatagtatttaacaaat |
120 |
Q |
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| T |
29331941 |
ggtttctcttacacaggcctaaattttaatgacactgccgagtttgaatagtttcaacccatataaactttctctgatcaatcaatagtatttaacaaat |
29331842 |
T |
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| Q |
121 |
aaaagtctaatggattatactcagtgtgtaagtctttgttggttacttataattgtgccattagaacgttatttattaatcaatgcctgcaccatatgtt |
220 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
29331841 |
aaaagtctaatggattatactcagtgtgtaagtctttgttggttacttataattgtgccattagaacattatttattaatcaatgcctgcaccatatgtt |
29331742 |
T |
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| Q |
221 |
cctgtgtgtgaactgtgaagttgaccattatgcaaaaactacaaggttctgagtgtatacaatgtcagacaatgattttcattactatttttacccattt |
320 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29331741 |
cctgtgtgtgaactgtgaagttgaccattatgcaaaaactacaaggttctgagtgtatacaatgtcagacaatgattttcattactatttttacccattc |
29331642 |
T |
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| Q |
321 |
cgtgcatttcaagttagtgatgatg |
345 |
Q |
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||||||||||||||||||||||||| |
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| T |
29331641 |
cgtgcatttcaagttagtgatgatg |
29331617 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 22 - 140
Target Start/End: Complemental strand, 29303598 - 29303480
Alignment:
| Q |
22 |
gtttctcttacacaggcctaaattttaatgacacggccgagtttgaatagtttcaacccatataaactttctctgatcaatcaatagtatttaacaaata |
121 |
Q |
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|||||||||||||| ||||||||||||||||||| |||||||| |||| ||||| | || | |||||| || |||||||| || |||||||||||| |
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| T |
29303598 |
gtttctcttacacaagcctaaattttaatgacacccccgagtttaaataatttcattctatgtggactttcacttatcaatcagtaatatttaacaaatt |
29303499 |
T |
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| Q |
122 |
aaagtctaatggattatac |
140 |
Q |
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||| ||||| ||||||||| |
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| T |
29303498 |
aaaatctaacggattatac |
29303480 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 87 - 138
Target Start/End: Complemental strand, 29320876 - 29320825
Alignment:
| Q |
87 |
actttctctgatcaatcaatagtatttaacaaataaaagtctaatggattat |
138 |
Q |
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|||||| || ||||||||||| |||||||||||| ||| ||||||||||||| |
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| T |
29320876 |
actttcacttatcaatcaataatatttaacaaattaaaatctaatggattat |
29320825 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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