View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5491-Insertion-1 (Length: 961)
Name: NF5491-Insertion-1
Description: NF5491
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5491-Insertion-1 |
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Alignment Details
Target: chr1 (Bit Score: 703; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 703; E-Value: 0
Query Start/End: Original strand, 8 - 940
Target Start/End: Original strand, 38506694 - 38507615
Alignment:
| Q |
8 |
attgtttgtctggtctgtaacacgctgctttcatatattttgttttttaaactgttaatttgtgcgtactacgtagccttattctttttacttttatttg |
107 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
38506694 |
attgtttgtctggtctgtaacacgctgctttcatatatgttgttttttaaactgttaatttgtgcgta-------gccttattctttttacttttatttg |
38506786 |
T |
|
| Q |
108 |
acaggtcttttgatggctaatcctatttctgagatggacagggttatcaacaagctgagattgaagtataggacttacattgttgttatagggtgttgtg |
207 |
Q |
| |
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||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38506787 |
acaggtcctttgatggctaatcctatttctgagatggacagggctatcaacaagctgagattgaagtataggacttacattgttgttatagggtgttgtg |
38506886 |
T |
|
| Q |
208 |
atgttgccaaacatttttggagctgattttggagacaagattcattgttttatcttcttgactgacccaaaacacaatcaattcgaagtttgtgttgaga |
307 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | || |
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| T |
38506887 |
atgttgccaaacatttttggagctgattttggagacaagattcattgttttatcttcttgactgacccaaaacacaatcaattcgaagttctttttct-- |
38506984 |
T |
|
| Q |
308 |
gaaccaatggtttgttctttttctccaaagtctggaaggccctgaaggatttttacgggattggattgggtgcattgatcacgttggtttttgctggact |
407 |
Q |
| |
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||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
38506985 |
---ccaatggtttgttctttttctccaaagtctggaaggcgctgaaggatttttacgggattggattgggtgcatggatcacgttggtttttgctggact |
38507081 |
T |
|
| Q |
408 |
aggacaatttgcaattgtcgtgaaggataggtttgggaagaatgttaggtgtcctgtctttgaacctactatgaaatttttcattgacaagacatttgtt |
507 |
Q |
| |
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|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
38507082 |
aggacagtttgcaattgtcgtgaaggataggtttgggaagaatgttaggtgtcctgtctttgaacctcctatgaaatttttcattgacaagacatttgtt |
38507181 |
T |
|
| Q |
508 |
caaccaaccttcaatgatgttctccctcccttaactgctgctctttcatatcgttacaatacgaataacttgacaattgattttgtgaaaaaattggatg |
607 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |||||| |||||| ||||| |||||||||||||||||||||||||||||||||||||| |
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|
| T |
38507182 |
caaccaaccttcaatgatgttctccctcccttaactgctgatctttcttatcgtcacaatgtgaataacttgacaattgattttgtgaaaaaattggatg |
38507281 |
T |
|
| Q |
608 |
aagatgatgtgcacaaagggtttttggtatgaatgttttttcgttaaattaatggagtatactaagatttgtttgttcagtgactaatatgaatttcttt |
707 |
Q |
| |
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|||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||| |
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| T |
38507282 |
aagaggatgtgcacaaagggtttttgttatgaatgttttttcgttaaattaatggagtatactaagatttttttgttcagtgactaataggaatttcttt |
38507381 |
T |
|
| Q |
708 |
ttgtgannnnnnnnactttaatagatgctgaaatatgaaggacgtgttcagcaggttattgacatggctgccacaactgtgaaactggtggatgactatg |
807 |
Q |
| |
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|||||| ||||||||||||||| |||||||||||||| ||||||||||||||| |||||||||||||||| |||||||||||||||||||||| |
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|
| T |
38507382 |
ttgtgattttttttactttaatagatgctcaaatatgaaggacgcgttcagcaggttattaacatggctgccacaaccgtgaaactggtggatgactatg |
38507481 |
T |
|
| Q |
808 |
gaaatgagtgggactatgttttgatgtttggatcgactccgtacgagcactac-agattggtgggagctggaagcgttttgttgatgctcacaannnnnn |
906 |
Q |
| |
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|||||||||||||| ||||||||||||||||| ||||||||| ||||||| | |||||||||||||||||||||||||||||||||||||||| |
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| T |
38507482 |
aaaatgagtgggactgtgttttgatgtttggattgactccgtatgagcactgcaagattggtgggagctggaagcgttttgttgatgctcacaaattttt |
38507581 |
T |
|
| Q |
907 |
ngaaggtgcgaggattatgattggcgtccaggtg |
940 |
Q |
| |
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||||||| ||||||||||||| ||| ||||||| |
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|
| T |
38507582 |
tgaaggtgtgaggattatgatttgcgcccaggtg |
38507615 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 58; Significance: 7e-24; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 58; E-Value: 7e-24
Query Start/End: Original strand, 732 - 896
Target Start/End: Complemental strand, 43808183 - 43808018
Alignment:
| Q |
732 |
atgctgaaatatgaaggacgtgttcagcaggttattgacatggctgccacaactgtgaaactggtggatgactatggaaatgagtgggactatgttttga |
831 |
Q |
| |
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|||||||||||||||||||| | || || ||||||||| ||||||| |||| |||||||||| |||||||| |||||||| ||||||| |||||||| |
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| T |
43808183 |
atgctgaaatatgaaggacgatgtgaggagattattgacagggctgccgcaaccgtgaaactgggggatgactgtggaaatgcttgggactgtgttttga |
43808084 |
T |
|
| Q |
832 |
tgtttggatcgactccgtacgagcactac-agattggtgggagctggaagcgttttgttgatgctc |
896 |
Q |
| |
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||||||| ||||||| ||| ||| | | | |||||||||||| || |||||||| ||||||||| |
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| T |
43808083 |
tgtttgggtcgactctgtatgagtattgcaagattggtgggatgtgaaagcgtttcattgatgctc |
43808018 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 36; Significance: 0.00000000009; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 582 - 641
Target Start/End: Original strand, 16673565 - 16673624
Alignment:
| Q |
582 |
aattgattttgtgaaaaaattggatgaagatgatgtgcacaaagggtttttggtatgaat |
641 |
Q |
| |
|
|||||||||||||||||| ||| |||| |||||||| |||| ||||||||||||||||| |
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|
| T |
16673565 |
aattgattttgtgaaaaagttgactgaaaatgatgtgaacaaggggtttttggtatgaat |
16673624 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 582 - 641
Target Start/End: Original strand, 17647933 - 17647992
Alignment:
| Q |
582 |
aattgattttgtgaaaaaattggatgaagatgatgtgcacaaagggtttttggtatgaat |
641 |
Q |
| |
|
|||||||||||||||||| ||| |||| |||||||| |||| ||||||||||||||||| |
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|
| T |
17647933 |
aattgattttgtgaaaaagttgactgaaaatgatgtgaacaaggggtttttggtatgaat |
17647992 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 36; Significance: 0.00000000009; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 582 - 641
Target Start/End: Complemental strand, 2479907 - 2479848
Alignment:
| Q |
582 |
aattgattttgtgaaaaaattggatgaagatgatgtgcacaaagggtttttggtatgaat |
641 |
Q |
| |
|
|||||||||||||||||| ||| |||| |||||||| |||| ||||||||||||||||| |
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| T |
2479907 |
aattgattttgtgaaaaagttgactgaaaatgatgtgaacaaggggtttttggtatgaat |
2479848 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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