View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5491-Insertion-10 (Length: 143)
Name: NF5491-Insertion-10
Description: NF5491
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5491-Insertion-10 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 112; Significance: 5e-57; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 112; E-Value: 5e-57
Query Start/End: Original strand, 8 - 143
Target Start/End: Complemental strand, 39117927 - 39117792
Alignment:
| Q |
8 |
ccttctcgtgttgttgtgtttgagacaaccattaatttgctccagctgatccttcaagtcaaataatgtaacttcaacactgattacaaatatactgggt |
107 |
Q |
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| T |
39117927 |
ccttctcgtgttgctgtgtttgagacaaccattaatttcctctagctgatccttcaagtcaaataatgtaacttcaacactgattacaaacatattggat |
39117828 |
T |
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| Q |
108 |
tttctcatgttgtagtaaactacaactaggttagtg |
143 |
Q |
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| T |
39117827 |
tttctcatgttgtagtaaactacaactaggttagtg |
39117792 |
T |
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Target: chr4 (Bit Score: 30; Significance: 0.00000005; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.00000005
Query Start/End: Original strand, 27 - 68
Target Start/End: Original strand, 16972634 - 16972675
Alignment:
| Q |
27 |
ttgagacaaccattaatttgctccagctgatccttcaagtca |
68 |
Q |
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| T |
16972634 |
ttgagacgaccattaatttggtccagctggtccttcaagtca |
16972675 |
T |
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