View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5491-Insertion-12 (Length: 305)
Name: NF5491-Insertion-12
Description: NF5491
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5491-Insertion-12 |
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| [»] chr3 (3 HSPs) |
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| [»] chr1 (1 HSPs) |
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| [»] scaffold0513 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 290; Significance: 1e-163; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 290; E-Value: 1e-163
Query Start/End: Original strand, 8 - 305
Target Start/End: Original strand, 50832420 - 50832717
Alignment:
| Q |
8 |
taaaacatcttttaacatggataattctagcaatagtaaaagagtttagcagctgcttacagtctagtataacagtgtcaattccagcactgaaactctt |
107 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50832420 |
taaaacatcttttaacatggataattctagcaatagtaaaagagtttagtagctgcttacagtctagtataacagtgtcaattccagcactgaaactctt |
50832519 |
T |
|
| Q |
108 |
tcctaagatgcagtttactacattctcagcatcagatgaaattatcaagcttcagatacctctttctagagcagattgcacattgcagaccccatcgcac |
207 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
50832520 |
tcctaagatgcagtttactacattctcagcatcagatgaaattatcaagcttcagatacctctttctagagcagattgcacattgcataccccatcgcac |
50832619 |
T |
|
| Q |
208 |
acctaaatcttctgctaaggctgactctactgcaatttcttccaatctgcaggttttaaaaacaacggctccatcgtgatttttcacaatcaaaccca |
305 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50832620 |
acctaaatcttctgctaaggctgactctactgcaatttcttccaatctgcaggttttaaaaacaacggctccatcgtgatttttcacaatcaaaccca |
50832717 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 290; E-Value: 1e-163
Query Start/End: Original strand, 8 - 305
Target Start/End: Complemental strand, 50843433 - 50843136
Alignment:
| Q |
8 |
taaaacatcttttaacatggataattctagcaatagtaaaagagtttagcagctgcttacagtctagtataacagtgtcaattccagcactgaaactctt |
107 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50843433 |
taaaacatcttttaacatggataattctagcaatagtaaaagagtttagtagctgcttacagtctagtataacagtgtcaattccagcactgaaactctt |
50843334 |
T |
|
| Q |
108 |
tcctaagatgcagtttactacattctcagcatcagatgaaattatcaagcttcagatacctctttctagagcagattgcacattgcagaccccatcgcac |
207 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
50843333 |
tcctaagatgcagtttactacattctcagcatcagatgaaattatcaagcttcagatacctctttctagagcagattgcacattgcataccccatcgcac |
50843234 |
T |
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| Q |
208 |
acctaaatcttctgctaaggctgactctactgcaatttcttccaatctgcaggttttaaaaacaacggctccatcgtgatttttcacaatcaaaccca |
305 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50843233 |
acctaaatcttctgctaaggctgactctactgcaatttcttccaatctgcaggttttaaaaacaacggctccatcgtgatttttcacaatcaaaccca |
50843136 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 250; E-Value: 1e-139
Query Start/End: Original strand, 8 - 305
Target Start/End: Original strand, 32792043 - 32792340
Alignment:
| Q |
8 |
taaaacatcttttaacatggataattctagcaatagtaaaagagtttagcagctgcttacagtctagtataacagtgtcaattccagcactgaaactctt |
107 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
32792043 |
taaaacatctttttacatggataattctagcaatagtaaaagagtttagtagctatttacagtctagtataacagtgtcaattccagcagtgaaactctt |
32792142 |
T |
|
| Q |
108 |
tcctaagatgcagtttactacattctcagcatcagatgaaattatcaagcttcagatacctctttctagagcagattgcacattgcagaccccatcgcac |
207 |
Q |
| |
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|||||||||| |||||||| |||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32792143 |
tcctaagatgtagtttacttcattctcagcatcagatgcaattatcaagcttgagatacctctttctagagcagattgcacattgcagaccccatcgcac |
32792242 |
T |
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| Q |
208 |
acctaaatcttctgctaaggctgactctactgcaatttcttccaatctgcaggttttaaaaacaacggctccatcgtgatttttcacaatcaaaccca |
305 |
Q |
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||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
32792243 |
acctaaagcttctgctaaggctggctctactgcaatttcttccaatctgcaggttttaaaaacaacggctccatcatgatttttcacaatcaaaccca |
32792340 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 246; Significance: 1e-136; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 8 - 305
Target Start/End: Original strand, 24534219 - 24534516
Alignment:
| Q |
8 |
taaaacatcttttaacatggataattctagcaatagtaaaagagtttagcagctgcttacagtctagtataacagtgtcaattccagcactgaaactctt |
107 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
24534219 |
taaaacatctttttacatggataattctagcaatagtaaaagagtttagtagctgtttacagtctagtataacagtgtcaattccagcagtgaaactctt |
24534318 |
T |
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| Q |
108 |
tcctaagatgcagtttactacattctcagcatcagatgaaattatcaagcttcagatacctctttctagagcagattgcacattgcagaccccatcgcac |
207 |
Q |
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||||||||||||||||||| ||||||||||||||||| ||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
24534319 |
tcctaagatgcagtttacttaattctcagcatcagatgcaattatcaagcttgagatacctctttctagagcaaattgcacattgcagaccccatcgcac |
24534418 |
T |
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| Q |
208 |
acctaaatcttctgctaaggctgactctactgcaatttcttccaatctgcaggttttaaaaacaacggctccatcgtgatttttcacaatcaaaccca |
305 |
Q |
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||||||| ||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
24534419 |
acctaaagcttctgctaaggctggctctactgcaatttcttccaatctgtaggttttaaaaacaacggctccatcatgatttttcacaatcaaaccca |
24534516 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0513 (Bit Score: 89; Significance: 6e-43; HSPs: 1)
Name: scaffold0513
Description:
Target: scaffold0513; HSP #1
Raw Score: 89; E-Value: 6e-43
Query Start/End: Original strand, 110 - 304
Target Start/End: Complemental strand, 7682 - 7495
Alignment:
| Q |
110 |
ctaagatgcagtttactacattctcagcatcagatgaaattatcaagcttcagatacctctttctagagcagattgcacattgcagaccccatcgcacac |
209 |
Q |
| |
|
||||||||||| || ||||||||||||||||||||| ||| ||||||||| ||||||||||||||||||||||| |||| ||||||||| ||| |
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| T |
7682 |
ctaagatgcagattgctacattctcagcatcagatgcaataatcaagcttgagatacctctttctagagcagat-------tgcaaaccccatcgagcac |
7590 |
T |
|
| Q |
210 |
ctaaatcttctgctaaggctgactctactgcaatttcttccaatctgcaggttttaaaaacaacggctccatcgtgatttttcacaatcaaaccc |
304 |
Q |
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||||| |||| || |||||| ||| ||||||||||| ||||||||||||| ||| |||||||| ||||||| ||||||||||||||| |||||| |
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| T |
7589 |
ctaaagcttcaacttaggctggctccactgcaatttcctccaatctgcaggctttgaaaacaacagctccattgtgatttttcacaattaaaccc |
7495 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 68; Significance: 2e-30; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 193 - 304
Target Start/End: Original strand, 17721060 - 17721171
Alignment:
| Q |
193 |
cagaccccatcgcacacctaaatcttctgctaaggctgactctactgcaatttcttccaatctgcaggttttaaaaacaacggctccatcgtgatttttc |
292 |
Q |
| |
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|||||| ||||||||||||||| |||| |||||||||| ||| ||||||| |||||||||| |||||| ||| ||||||| |||| |||||||||||||| |
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| T |
17721060 |
cagaccgcatcgcacacctaaagcttcagctaaggctggctccactgcaagttcttccaatgtgcaggctttgaaaacaatggcttcatcgtgatttttc |
17721159 |
T |
|
| Q |
293 |
acaatcaaaccc |
304 |
Q |
| |
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|||||||||||| |
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| T |
17721160 |
acaatcaaaccc |
17721171 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 85 - 140
Target Start/End: Original strand, 17720996 - 17721051
Alignment:
| Q |
85 |
tcaattccagcactgaaactctttcctaagatgcagtttactacattctcagcatc |
140 |
Q |
| |
|
||||| ||| || |||||||||||||||||||||||||||||||||||||| |||| |
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|
| T |
17720996 |
tcaatcccaacagtgaaactctttcctaagatgcagtttactacattctcaacatc |
17721051 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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