View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5491-Insertion-3 (Length: 842)
Name: NF5491-Insertion-3
Description: NF5491
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5491-Insertion-3 |
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| [»] chr7 (3 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 653; Significance: 0; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 653; E-Value: 0
Query Start/End: Original strand, 7 - 842
Target Start/End: Complemental strand, 36770666 - 36769834
Alignment:
| Q |
7 |
agaatttgagatcagcatatagtttttcatgtggtgattttggttcgtgtgtgtcagttgttggggatgaaggttttgaggaggttggtagtattctttg |
106 |
Q |
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| T |
36770666 |
agaatttgagatcagcatatagtttttcatgtggtgattttggttcgtgtgtgtcagttgttggggatgaaggttttgaggaggttggtagtattctttg |
36770567 |
T |
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| Q |
107 |
tgtagttccaagatttgccatgacacttttgaagtgaaaactgaaaaaatcaaagaatggatcaattgaaaaagtgctttgatgaacaacaaatgtttta |
206 |
Q |
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| T |
36770566 |
tgtagttccaagatttgccatgacacttttgaagtgaaaactgaaaaa-tcaaagaatggatcaattgaaaaagtgctttgatggacaacaaatgtttta |
36770468 |
T |
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| Q |
207 |
cataagttgtctagatttaacttgatatacatatatagcatccagtggaaagaagggacagaaaattcttcattgacgcaagttgaagactttcaaaatt |
306 |
Q |
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| T |
36770467 |
cataagttgtgtagatttaacttgatatacatatatagtatccagtggaaagaagggacagaaaattcttcattgacgcaggttgaagactttcaaaatt |
36770368 |
T |
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| Q |
307 |
atatactaagaccaggtcaaatac---at-tatattagaatagtttgcacctcaatttctgtttggcccttacagtggtctataatctatatatattatt |
402 |
Q |
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| T |
36770367 |
acatacgaagaccaggtcaaataatctatatatattagaatagtttgcacctcaatttctgtttggcccttacagtggtctataatctatatatattatt |
36770268 |
T |
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| Q |
403 |
acataagactaattcatatggaagctacannnnnnnagccattacatcacgattaataaaatcattatcgttaagaggatactcatttgaagattacgaa |
502 |
Q |
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| T |
36770267 |
acacaagactaattcatatggaagctacatttttttagccattacatcacgattaataaaatcattatcgttaagaggatactcatttgaagattacgaa |
36770168 |
T |
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| Q |
503 |
taagtctataatcttaatatctaaaagctacttggttgactgacccatacacggtaacggaagactcagcaagcatcaaagaaattccataaagaaaagt |
602 |
Q |
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| T |
36770167 |
taagtctatgctcttaatatctaaaagctacttggttgactgacccatacacagtaacggaagactcagcaagcatcaaacaaattccataaagaaaagt |
36770068 |
T |
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| Q |
603 |
ccagtatcgattaggaatcttcttctttgtttcaaatattgctttcagtcaatttctttgcatcaagtcactataacacctctttcaacaaaacnnnnnn |
702 |
Q |
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| T |
36770067 |
ccaatatcgattaggaatcttcttctttgtttcaaatattgctttcagtcaatttctttgcatcaagtcactataacacctctttcaacaaaa--aaaaa |
36769970 |
T |
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| Q |
703 |
nnnntcactataatataatgccaaactattatattgtgactttttaatgctaaaatacatcttcnnnnnnnacaattcaatattttcaaaggatataatt |
802 |
Q |
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| T |
36769969 |
aaaatcactataatataatgccaaactattatattgtgactttttaatgctaaaatacatcttctttttttacaattcaatattttcaaaggata----t |
36769874 |
T |
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| Q |
803 |
aaaccgatgtacaagaacaaataaatttttgcaaacctag |
842 |
Q |
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| T |
36769873 |
aaaccgatgtacaagaacgaataaatttctgcaaacctag |
36769834 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 90; E-Value: 5e-43
Query Start/End: Original strand, 707 - 842
Target Start/End: Complemental strand, 36765966 - 36765835
Alignment:
| Q |
707 |
tcactataatataatgccaaactattatattgtgactttttaatgctaaaatacatcttcnnnnnnnacaattcaatattttcaaaggatataattaaac |
806 |
Q |
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| T |
36765966 |
tcactataatataatgccaaactattatattgtgactttttaatgctaaaatacatcttcttcttttacaattcaatattttcaaaggata----taaac |
36765871 |
T |
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| Q |
807 |
cgatgtacaagaacaaataaatttttgcaaacctag |
842 |
Q |
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| T |
36765870 |
cgatgtacaagaacgaataaatttctgcaaacctag |
36765835 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 79; E-Value: 2e-36
Query Start/End: Original strand, 7 - 177
Target Start/End: Complemental strand, 36772910 - 36772747
Alignment:
| Q |
7 |
agaatttgagatcagcatatagtttttcatgtggtgattttggttcgtgtgtgtcagttgttggggatgaaggttttgaggaggttggtagtattctttg |
106 |
Q |
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| T |
36772910 |
agaatttgaaattagcatatagtttttcatgtggtgattttggttcatatgtgtctgttgttggggatgaaggtttt---gaagttg---gtattctttg |
36772817 |
T |
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| Q |
107 |
tgtagttccaagatttgccatgacacttttgaagtgaaaactgaaaaaatcaaagaatggatcaattgaaa |
177 |
Q |
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| T |
36772816 |
tgtagttccaagatttgccataaaagctttgaaatggaaattg-gaaaatcaaagaatggatcaattgaaa |
36772747 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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