View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5491-Insertion-5 (Length: 627)

Name: NF5491-Insertion-5
Description: NF5491
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5491-Insertion-5
NF5491-Insertion-5
[»] chr1 (1 HSPs)
chr1 (8-627)||(31710265-31710877)


Alignment Details
Target: chr1 (Bit Score: 464; Significance: 0; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 464; E-Value: 0
Query Start/End: Original strand, 8 - 627
Target Start/End: Complemental strand, 31710877 - 31710265
Alignment:
Q  8 ctttgattgatttggtcttttgtatttgtatcttttattgctacttgctagtgttacgtagtgctagctagtctcttattgcatggtccaattcaactag 107  Q
    |||||||||||||||||||||||||||||||||||||||||||       |||||||||||||||||||||||||||||||||||||||||||||||||     
T  31710877 ctttgattgatttggtcttttgtatttgtatcttttattgcta-------gtgttacgtagtgctagctagtctcttattgcatggtccaattcaactat 31710785  T
Q  108 atgctaataaaaacaacattgattttgatgatgtcttcaaattcaaataagtgtatgttaggaatcaaaatcattcgcaacttgtcattatactaaagta 207  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  31710784 atgctaataaaaacaacattgattttgatgatgtcttcaaattcaaataagtgtatgataggaatcaaaatcattcgcaacttgtcattatactaaagta 31710685  T
Q  208 tcaaactcatgctcaattcaaacatacattaagtatatgtttgcttcaacggcgtgttcaccagaaccacagagnnnnnnnnnncatttttagcacttat 307  Q
     |||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||          ||||||||||||||||    
T  31710684 ccaaactcacgctcaattcaaacatacattaagtatatgtttgcttcaacggtgtgttcaccagaaccacagagaaaaaaaaa-catttttagcacttat 31710586  T
Q  308 gtttggctttggg-cattaatgaaattgtggcaaaagtagtataggatacgcgattgaagatttaaacgtcaaaccaaacatatgttaagagtattattg 406  Q
    | ||||||||||| | |||||||||||| |||||||||||||||| || ||||||||||||||||||| |||||||||||||||||||||| ||||||||    
T  31710585 gcttggctttggggctttaatgaaattgcggcaaaagtagtatagaatgcgcgattgaagatttaaacttcaaaccaaacatatgttaagaatattattg 31710486  T
Q  407 gtttgagaatttgtttttatctagttctcactaatcatttcggcctggtatatatcatgtctgatatctcagtagatttgtcaaaattacgaagagccac 506  Q
    ||||||||||||||||||||||||||||||| | |||||||||||| |||||||||||||||| ||||||||||||||||||||||| ||||| ||||||    
T  31710485 gtttgagaatttgtttttatctagttctcaccagtcatttcggcctcgtatatatcatgtctggtatctcagtagatttgtcaaaatcacgaaaagccac 31710386  T
Q  507 cttaattttgcaaaataccgtggccattttctcgaatcatatatatgattttaacataattcaaatgcaattatgaattactcgtacattatcaaaacta 606  Q
    |||||||||| ||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||    
T  31710385 cttaattttgtaaattaccgtggccattttctcgaatcatatatatgattttagcataattcaaatgcaattatgaattactagtacattatcaaaacta 31710286  T
Q  607 gcctagaataattttgcttgt 627  Q
    |||||||||||||||||||||    
T  31710285 gcctagaataattttgcttgt 31710265  T

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