View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5491-Insertion-6 (Length: 556)
Name: NF5491-Insertion-6
Description: NF5491
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5491-Insertion-6 |
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| [»] chr2 (3 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 485; Significance: 0; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 485; E-Value: 0
Query Start/End: Original strand, 7 - 556
Target Start/End: Complemental strand, 40063852 - 40063301
Alignment:
| Q |
7 |
aaaactctggttcaaaagaaaacagatatgaaaacacaaacaaataacccaacatagtcaatctaaacctaagtgaaacataacaaattagcaagggaac |
106 |
Q |
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|||||| | ||||||||||||| ||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
40063852 |
aaaactttcgttcaaaagaaaatagatatggaaacacaaacaaataacccaacatagttaatctaaacctaagtgaaacataacaaattagcaagggaac |
40063753 |
T |
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| Q |
107 |
aggaattcagataaacaccttctttacaattgacagcgctttattgctgctgcagcgtccgcggtagaagtttccgcatgtccccagtggtgttccatag |
206 |
Q |
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| T |
40063752 |
aagaattcagataaacaccttctttacaattgacagcgccttattgctgctgcagcgtccgcggtagaagtttccgcatgtccccagtggtgttccatag |
40063653 |
T |
|
| Q |
207 |
cttgcaaatttgatggaagagattacctgattatgattaggacagttgagcaacagtgcaggccctacttttccccctgattctgtatcttggttccaca |
306 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||| |
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| T |
40063652 |
cttgcaaatttgatggaaaagattacctgattatgattaggacagttgagcaacagtgcaggccctacttttccccatgatgttgtatcttggttccaca |
40063553 |
T |
|
| Q |
307 |
agtctatttgaggtgggtgagaatcagatacatgtgcacacaaactttctagctgttttgtagcaaaagctatttgtgttggatcaccgccattttcctc |
406 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40063552 |
agtctatttgaggtgggtgagaatcagatacatgggcacacaaactttctagctgttttgtagcaaaagctatttgtgttggatcaccgccattttcctc |
40063453 |
T |
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| Q |
407 |
aaacaatataagagtgttgccgtttggtttcaaaaacgatcgtggtacatggtatctgcgagatgggattaatgtctcagtcacatcgtagatcaaga-- |
504 |
Q |
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| T |
40063452 |
aaacaatacaagagtgttgccgtttggtttcaaaaacgatcgtggtacatggtatctgcgagatgggattaatgtctcagtcacatcgtagatcaagatt |
40063353 |
T |
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| Q |
505 |
tttatttcatgtttaaactctttttcattgaaaatttgcaacacttacaatg |
556 |
Q |
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| T |
40063352 |
tttttttcatgtttaaactctttttcattgaaaatttgcaacacttacaatg |
40063301 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 367; E-Value: 0
Query Start/End: Original strand, 55 - 556
Target Start/End: Complemental strand, 40082154 - 40081652
Alignment:
| Q |
55 |
ccaacatagtcaatctaaacctaagtgaaacataacaaattagcaagggaacaggaattcagataaacaccttctttacaattgacagcgctttattgct |
154 |
Q |
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||||||||||||||||||||| | ||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||| |||||||| |
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| T |
40082154 |
ccaacatagtcaatctaaaccaatgtgaaacataacaaattagtaagggaacaggagttcagataaacaccttctttacaattgacagcgccttattgct |
40082055 |
T |
|
| Q |
155 |
gctgcagcgtccgcggtagaagtttccgcatgtccccagtggtgttccatagcttgcaaatttgatggaagagattacctgattatgattaggacagttg |
254 |
Q |
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||||||||||||||||||||||||||| || ||||| | ||||||||||||||||||||||||||||| || ||||||||||||||||||||||| || |
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| T |
40082054 |
gctgcagcgtccgcggtagaagtttccacacgtccctaaaggtgttccatagcttgcaaatttgatggatgaaattacctgattatgattaggacaactg |
40081955 |
T |
|
| Q |
255 |
agcaacagtgcaggccctacttttccccctgattctgtatcttggttccacaagtctatttgaggtgggtgagaatcagatacatgtgcacacaaacttt |
354 |
Q |
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|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||| |
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| T |
40081954 |
agcaacagagcaggccctacttttccccctgattctgtatcttggttccacaagtctatttgaggtgggtgagaatcagatacatgtgaacacacacttt |
40081855 |
T |
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| Q |
355 |
ctagctgttttgtagcaaaagctatttgtgttggatcaccgccattttcctcaaacaatataagagtgttgccgtttggtttcaaaaacgatcgtggtac |
454 |
Q |
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| T |
40081854 |
ccagctgttttgtagcaaaagatatttgggtcggatcaccgccattttcctcaaacaatacaagagtgttgccgtttggtttcaaaaacgatcgtggtac |
40081755 |
T |
|
| Q |
455 |
atggtatctgcgagatgggattaatgtctcagtcacatcgtagatcaagatttatttc-atgtttaaactctttttcattgaaaatttgcaacacttaca |
553 |
Q |
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||||||||||| ||||| ||||| ||||||||| ||||| |||||||||||| |||| |||||||||| ||||| ||||||||||||||||||||||| |
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| T |
40081754 |
atggtatctgcaagatgcgattattgtctcagtaacatcatagatcaagattattttctttgtttaaacttttttttattgaaaatttgcaacacttaca |
40081655 |
T |
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| Q |
554 |
atg |
556 |
Q |
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| T |
40081654 |
atg |
40081652 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 345; E-Value: 0
Query Start/End: Original strand, 77 - 556
Target Start/End: Complemental strand, 40094414 - 40093932
Alignment:
| Q |
77 |
aagtgaaacataacaaattagcaagggaacaggaattcagataaacaccttctttacaattgacagcgctttattgctgctgcagcgtccgcggtagaag |
176 |
Q |
| |
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||||||| ||||||||||||| ||||||||| |||| ||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||| |
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| T |
40094414 |
aagtgaaccataacaaattagaaagggaacatgaatccagataaacaccttctttacaattgacagtgtcttattgctgctgcagcgtccgcggtagaag |
40094315 |
T |
|
| Q |
177 |
tttccgcatgtccccagtggtgttccatagcttgcaaatttgatggaagagattacctgattatgattaggacagttgagcaacagtgcaggccctactt |
276 |
Q |
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||||| || ||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40094314 |
tttccacacgtccctagtggtgttccatagcttgcaaatttgatggaagatattacctgattatgattaggacagttgagcaacagtgcaggccctactt |
40094215 |
T |
|
| Q |
277 |
ttccccctgattctgtatcttggttccacaagtctatttgaggtgggtgagaatcagatacatgtgcacacaaactttctagctgttttgtagcaaaagc |
376 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||| ||| ||||||||||||||||| |
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| T |
40094214 |
ttccccctgattctgtatcttggttccacaagtctatttgaggtgggtgagaatcagatacatgggcacacacacttcctatctgttttgtagcaaaaga |
40094115 |
T |
|
| Q |
377 |
tatttgtgttggatcaccgccattttcctcaaacaatataagagtgttgccgtttggtttcaaaaacgatcgtggtacatggtatctgcgagatgggatt |
476 |
Q |
| |
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|||||||||||||||||| ||| ||||||||||||||| ||||||||| || ||||||||||||||||| |||| || ||||||||| |||||| |||| |
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| T |
40094114 |
tatttgtgttggatcaccaccactttcctcaaacaatacaagagtgtttccatttggtttcaaaaacgactgtggcacgtggtatctgtgagatgagatt |
40094015 |
T |
|
| Q |
477 |
aatgtctcagtcacatcgtagatcaagatttatt---tcatgtttaaactctttttcattgaaaatttgcaacacttacaatg |
556 |
Q |
| |
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||||||||| ||||||| ||||||||||||| || |||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
40094014 |
aatgtctcaatcacatcatagatcaagattttttttctcatgtttaaactcttcttcattgaaaatttgcaacacttacaatg |
40093932 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 47; Significance: 1e-17; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 148 - 426
Target Start/End: Original strand, 22012115 - 22012393
Alignment:
| Q |
148 |
tattgctgctgcagcgtccgcggtagaagtttccgcatgtccccagtggtgttccatagcttgcaaatttgatggaagagattacctgattatgattagg |
247 |
Q |
| |
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||||||||||||||| |||| ||| | ||||||| || ||||| | || |||||| ||||||||||||| ||||||||||| |||||||| ||| ||| |
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| T |
22012115 |
tattgctgctgcagcttccgtggttgtagtttccacaagtcccacgaggcgttccaaagcttgcaaatttaatggaagagatcgcctgattaggataagg |
22012214 |
T |
|
| Q |
248 |
acagttgagcaacagtgcaggccctacttttccccctgattctgtatcttggttccacaagtctatttgaggtgggtgagaatcagatacatgtgcacac |
347 |
Q |
| |
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|| | || ||||| |||| ||||| |||| ||||||||| || ||||| ||||| | || |||||||| |||| |||||||| |||| |
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| T |
22012215 |
gcattccagtgacagtacaggacctacctttctttctgattctgcattcgaattccatgtgtctacaggtggagggtgagattcagttacatgtgaacac |
22012314 |
T |
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| Q |
348 |
aaactttctagctgttttgtagcaaaagctatttgtgttggatcaccgccattttcctcaaacaatataagagtgttgc |
426 |
Q |
| |
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| |||||||| |||||||||| |||||| ||||| ||| || || || || ||||||||||||||| || |||||||| |
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| T |
22012315 |
acactttctatctgttttgtaccaaaagatatttttgtagggtcgcctccgctttcctcaaacaatacaaaagtgttgc |
22012393 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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