View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5491-Insertion-7 (Length: 511)
Name: NF5491-Insertion-7
Description: NF5491
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5491-Insertion-7 |
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| [»] chr2 (2 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 432; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 432; E-Value: 0
Query Start/End: Original strand, 7 - 511
Target Start/End: Original strand, 44263411 - 44263916
Alignment:
| Q |
7 |
aattggtacattaaaaatgagtgatattcacaataacgtagcactgtctaactgttgcatacaaagttgagttatgtagtccaagttgtacccccacatc |
106 |
Q |
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| T |
44263411 |
aattggtacattaaaaatgagtaatattcacaataacgtagcactgtctaactgttgcatacaaagctgagttatgcagtccaagttgtacccccacatc |
44263510 |
T |
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| Q |
107 |
tttattgaatttattccaaaatatgtctctatcttacatcatttccaaattcttaactccaataaacacttatatgacaccttaannnnnnnattttgtt |
206 |
Q |
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| T |
44263511 |
tttattgaatttattccaaaatatgtctctatcttacatcatttccaaattcttatctccaataaacacttatatgacaccttaatttttttattttttt |
44263610 |
T |
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| Q |
207 |
a-ttaacattgaaagcctctctatcaggacatagattttctccacttatgaggagtcctacttttgaccacagtactagttttcatgtccataggtgttt |
305 |
Q |
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| T |
44263611 |
atttaacaatgaaagcctctctatcaggacatagattttctccacttatgaggagtcctacttttgaccacagtactagttttcatgtccataggtgttt |
44263710 |
T |
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| Q |
306 |
gccttccaaatccaaattcagtttcagcttcatcttgttcaacattctccatctctccgatgcttttactaaaagcaagtttcttccatttgaagaaact |
405 |
Q |
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| T |
44263711 |
gccttccaaatccaaattcagtttcagcttcatcttgttcaacattctccatctctccgatgcttttactaaaagcaagtttcttccatttgaagaaact |
44263810 |
T |
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| Q |
406 |
tttcttcttctcagccatcttgtccatctgtgcttgcatgacattgcactgactctgcagcctgtaaacatcttccttcagnnnnnnnatctccatttgt |
505 |
Q |
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| T |
44263811 |
tttcttcttctcagccatcttgtccatctgtgcttgcatgacattgcactgactctgcagcctgtaaacatcttccttcagtttttttatctccatttgt |
44263910 |
T |
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| Q |
506 |
tgtgtg |
511 |
Q |
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| T |
44263911 |
tgtgtg |
44263916 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 89 - 223
Target Start/End: Original strand, 44260686 - 44260823
Alignment:
| Q |
89 |
aagttgta-cccccacatctttattgaatttattccaaaatatgtctctatcttacatcatttccaaattct---taactccaataaacacttatatgac |
184 |
Q |
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| T |
44260686 |
aagttgtatcccccgcatctttattgaagttattccaaagtaggtcactatcttacattatttccaaagtctttataactccaataaacagttatacaac |
44260785 |
T |
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| Q |
185 |
accttaannnnnnnattttgttattaacattgaaagcct |
223 |
Q |
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| T |
44260786 |
aacttaa-ttttttattttgttattaacaatgaaagcct |
44260823 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 133; Significance: 6e-69; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 133; E-Value: 6e-69
Query Start/End: Original strand, 303 - 486
Target Start/End: Original strand, 56165443 - 56165629
Alignment:
| Q |
303 |
tttgccttccaaatccaaattcagtttcagcttcatcttgttcaacattctccatctctccg---atgcttttactaaaagcaagtttcttccatttgaa |
399 |
Q |
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||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||| || |||||||||||||||||||||||||||||||| || |
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| T |
56165443 |
tttgccttccaaatcgaaattcagtttcagcttcatgttgttcaacattctccatctcgccaccaatgcttttactaaaagcaagtttcttccatttaaa |
56165542 |
T |
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| Q |
400 |
gaaacttttcttcttctcagccatcttgtccatctgtgcttgcatgacattgcactgactctgcagcctgtaaacatcttccttcag |
486 |
Q |
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| T |
56165543 |
gaaacctttcttcttctcaaccatcttttccatatgtgcttgcatgacattgcactgactttgcagcctgtaaacatcttccttcag |
56165629 |
T |
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