View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5491-Insertion-8 (Length: 316)
Name: NF5491-Insertion-8
Description: NF5491
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5491-Insertion-8 |
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Alignment Details
Target: chr4 (Bit Score: 200; Significance: 1e-109; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 72 - 303
Target Start/End: Original strand, 21147978 - 21148209
Alignment:
| Q |
72 |
catagcgggaaaagatagagtcaaaatgggaggctaaatttacacagttgcgatatttggcgtcaaaagtgtcgttaagtcttttatttacttgttcata |
171 |
Q |
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| T |
21147978 |
catagcgggaaaagatagagtcaaaacgggaggccaaatttacacagttgtgatatttggcgtcaaaagtgtcgttaagtcttttatttacttgttcata |
21148077 |
T |
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| Q |
172 |
gcattcaaattgttcttttatttgctttttctcctttcatatggagtatggcattgcttatcttcatatgctaattttatgacctttatatttaccgatt |
271 |
Q |
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||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||| |||| |
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| T |
21148078 |
gcattcaaattgttcttttatttactttttctcctttcatatggagtatggcattgcttatcttcatatgctaattttacgacctttttatttacggatt |
21148177 |
T |
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| Q |
272 |
cgtgtcattgagagtgctacttgttctgatta |
303 |
Q |
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|||||||||||| ||||||||||||||||||| |
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| T |
21148178 |
cgtgtcattgagggtgctacttgttctgatta |
21148209 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 67; E-Value: 9e-30
Query Start/End: Original strand, 8 - 74
Target Start/End: Original strand, 21147604 - 21147670
Alignment:
| Q |
8 |
caaaaccagtacacatgagcaaaagtataaccatgcaagtgaatagttttggttgcatgttttgcat |
74 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21147604 |
caaaaccagtacacatgagcaaaagtataaccatgcaagtgaatagttttggttgcatgttttgcat |
21147670 |
T |
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