View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5491-Insertion-9 (Length: 300)
Name: NF5491-Insertion-9
Description: NF5491
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5491-Insertion-9 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 291; Significance: 1e-163; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 291; E-Value: 1e-163
Query Start/End: Original strand, 7 - 297
Target Start/End: Complemental strand, 3895297 - 3895007
Alignment:
| Q |
7 |
atctctagctttctccccagcactctctgcagcttcctttgttctatccttggcatcataagcatagtctcttatactctctccagcattctctgcagca |
106 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3895297 |
atctctagctttctccccagcactctctgcagcttcctttgttctatccttggcatcataagcatagtctcttatactctctccagcattctctgcagca |
3895198 |
T |
|
| Q |
107 |
tcctttgttctctcctttgcatcataagcataatctctagccttctctccagcattctcagccttctctgcagccctatttgttccttctctggctttat |
206 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3895197 |
tcctttgttctctcctttgcatcataagcataatctctagccttctctccagcattctcagccttctctgcagccctatttgttccttctctggctttat |
3895098 |
T |
|
| Q |
207 |
cccacacagaacctgctgcttcattggttctgtcttttacctcataagcatagtctctagctttctctccagcattctctgccttctctgc |
297 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3895097 |
cccacacagaacctgctgcttcattggttctgtcttttacctcataagcatagtctctagctttctctccagcattctctgccttctctgc |
3895007 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 128 - 222
Target Start/End: Complemental strand, 3895056 - 3894962
Alignment:
| Q |
128 |
tcataagcataatctctagccttctctccagcattctcagccttctctgcagccctatttgttccttctctggctttatcccacacagaacctgc |
222 |
Q |
| |
|
||||||||||| |||||||| ||||||||||||||||| |||||||||||||| || | |||||||||| ||||||| ||||||| |||||||| |
|
|
| T |
3895056 |
tcataagcatagtctctagctttctctccagcattctctgccttctctgcagctctgtctgttccttctttggctttctcccacattgaacctgc |
3894962 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 39 - 165
Target Start/End: Complemental strand, 3895331 - 3895205
Alignment:
| Q |
39 |
cttcctttgttctatccttggcatcataagcatagtctcttatactctctccagcattctctgcagcatcctttgttctctcctttgcatcataagcata |
138 |
Q |
| |
|
||||||| ||||| ||||| |||||||||||||| ||||| |||| |||||| |||||||||| ||||||||||| ||||| |||||||||||||| |
|
|
| T |
3895331 |
cttccttggttctttcctttgcatcataagcataatctctagctttctccccagcactctctgcagcttcctttgttctatccttggcatcataagcata |
3895232 |
T |
|
| Q |
139 |
atctctagccttctctccagcattctc |
165 |
Q |
| |
|
||||| |||||||||||||||| |
|
|
| T |
3895231 |
gtctcttatactctctccagcattctc |
3895205 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 225 - 288
Target Start/End: Complemental strand, 3895331 - 3895268
Alignment:
| Q |
225 |
cttcattggttctgtcttttacctcataagcatagtctctagctttctctccagcattctctgc |
288 |
Q |
| |
|
|||| |||||||| || ||| | ||||||||||| |||||||||||||| |||||| ||||||| |
|
|
| T |
3895331 |
cttccttggttctttcctttgcatcataagcataatctctagctttctccccagcactctctgc |
3895268 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University