View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5491_high_10 (Length: 255)
Name: NF5491_high_10
Description: NF5491
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5491_high_10 |
 | |
|
| [»] scaffold0391 (1 HSPs) |
| | |
|
Alignment Details
Target: chr6 (Bit Score: 128; Significance: 3e-66; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 56 - 199
Target Start/End: Original strand, 20506702 - 20506844
Alignment:
| Q |
56 |
ttgtttctataggattgtgtaatttgaactaaacaatagtaattattcttcccctaaaaaatagtaattattctaaggatgtgtaaattgaggggttttg |
155 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
20506702 |
ttgtttctttaggattgtgtaatttgaactaaacaatagtaattattcttcccctaaaaaatagttattattctaaggatgtgtaaattgaggggttttg |
20506801 |
T |
|
| Q |
156 |
cactaggcacaagttttgtttgtagaaaataaataaaagagata |
199 |
Q |
| |
|
||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
20506802 |
cac-aggcacaagttttgtttgtagaaaataaataaaagagata |
20506844 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 171 - 239
Target Start/End: Original strand, 20506845 - 20506913
Alignment:
| Q |
171 |
ttgtttgtagaaaataaataaaagagataagatcaaggtaagtagaatgattaggttgtttcgattcat |
239 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
20506845 |
ttgtttgtagaaaataaataaaagagataagatcaaggtaagtagaatgtttaggttgtttcgattcat |
20506913 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 34
Target Start/End: Original strand, 20506620 - 20506653
Alignment:
| Q |
1 |
tgtattagtgtgttgataagtagtaatatttata |
34 |
Q |
| |
|
||||||||||||| |||||||||||||||||||| |
|
|
| T |
20506620 |
tgtattagtgtgtcgataagtagtaatatttata |
20506653 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 51; Significance: 3e-20; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 145 - 239
Target Start/End: Complemental strand, 1595421 - 1595329
Alignment:
| Q |
145 |
gaggggttttgcactaggcacaagttttgtttgtagaaaataaataaaagagataagatcaaggtaagtagaatgattaggttgtttcgattcat |
239 |
Q |
| |
|
||||||| ||||||||| |||| |||| |||||||||||| |||||||||| ||||||| |||||||| ||||| |||||||||||||||||||| |
|
|
| T |
1595421 |
gaggggtgttgcactagacacatgttt-gtttgtagaaaagaaataaaaga-ataagattaaggtaagaagaatcattaggttgtttcgattcat |
1595329 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 46; Significance: 2e-17; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 166 - 227
Target Start/End: Original strand, 9618529 - 9618590
Alignment:
| Q |
166 |
aagttttgtttgtagaaaataaataaaagagataagatcaaggtaagtagaatgattaggtt |
227 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||| || | |||||||||||||| |
|
|
| T |
9618529 |
aagtttggtttgtagaaaataaataaaagagataagatcaagttatgaagaatgattaggtt |
9618590 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 153 - 223
Target Start/End: Complemental strand, 26167427 - 26167358
Alignment:
| Q |
153 |
ttgcactaggcacaagttttgtttgtagaaaataaataaaagagataagatcaaggtaagtagaatgatta |
223 |
Q |
| |
|
||||||||| ||||| |||||||| ||||||| ||||||| || |||||||||||||||| |||||||||| |
|
|
| T |
26167427 |
ttgcactagacacaaattttgtttatagaaaagaaataaacga-ataagatcaaggtaaggagaatgatta |
26167358 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0391 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0391
Description:
Target: scaffold0391; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 141 - 223
Target Start/End: Original strand, 14037 - 14118
Alignment:
| Q |
141 |
aattgaggggttttgcactaggcacaagttttgtttgtagaaaataaataaaagagataagatcaaggtaagtagaatgatta |
223 |
Q |
| |
|
||||| ||| ||||||||||||||||| ||| |||| |||||| |||||||||| |||||||||| | ||| | |||||||| |
|
|
| T |
14037 |
aattgggggattttgcactaggcacaaaatttatttgcagaaaagaaataaaaga-ataagatcaacgaaagaaaaatgatta |
14118 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University