View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5491_high_11 (Length: 253)
Name: NF5491_high_11
Description: NF5491
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5491_high_11 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 208; Significance: 1e-114; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 12 - 239
Target Start/End: Original strand, 8075066 - 8075293
Alignment:
| Q |
12 |
aagaatatggtagtatttttaaagaaaggaaaatgcatttcagtagctagtgtaatctatgtatagaatttaaaaagtatgcattttccaaccgtgttaa |
111 |
Q |
| |
|
||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8075066 |
aagaaaatggtagtattgttaaagaaaggaaaatgcatttcagtagctagtgtaatctatgtatagaatttaaaaagtatgcattttccaaccgtgttaa |
8075165 |
T |
|
| Q |
112 |
atgtgttaaaaataataaagtagatctttaacgtgtaatatttatgaagacaaaatatagcaaagacgttgtatagtagcaaagatacaatgtgattctt |
211 |
Q |
| |
|
| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
8075166 |
aagtgttaaaaataataaagtagatctttaacgtgtaatatttatgaagacaaaatatagcaaagacgttgtatagtagcaaagatacaatgtgatcctt |
8075265 |
T |
|
| Q |
212 |
accaaaagtagtataaaaggtacaattt |
239 |
Q |
| |
|
||||||||||||||||||||||||||| |
|
|
| T |
8075266 |
gccaaaagtagtataaaaggtacaattt |
8075293 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University