View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5491_high_12 (Length: 249)
Name: NF5491_high_12
Description: NF5491
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5491_high_12 |
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| [»] scaffold0339 (2 HSPs) |
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Alignment Details
Target: scaffold0339 (Bit Score: 182; Significance: 2e-98; HSPs: 2)
Name: scaffold0339
Description:
Target: scaffold0339; HSP #1
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 13 - 210
Target Start/End: Complemental strand, 15909 - 15712
Alignment:
| Q |
13 |
ctggtgttttgagttttttcatgaaggaacttgagcaaactactagtgcctttaagatgcagcgagtaaacaactttattttgatatataaggatgtatt |
112 |
Q |
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| T |
15909 |
ctggtgttttgagttttttcatgaaggaacttgagcaaactactagtgcctttaagatgcagcgagtaaacaactttattttgatatataaggatgtatt |
15810 |
T |
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| Q |
113 |
caattccttatggtaaataaaaattagtcacattgcaatcaaaattatcgggaaaaacccaagtaccgcatcaaatagataagacttatgataagagt |
210 |
Q |
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| T |
15809 |
caattccttatggtaaataaaaattagtcaccttgcaatcaaaattatcgggaaaaacccaagtaccacatcaaatagataagatttttgataagagt |
15712 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0339; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 13 - 52
Target Start/End: Original strand, 2956 - 2994
Alignment:
| Q |
13 |
ctggtgttttgagttttttcatgaaggaacttgagcaaac |
52 |
Q |
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| T |
2956 |
ctggtgttttgagtttt-tcatgaaggaacttgagcaaac |
2994 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 162 - 210
Target Start/End: Complemental strand, 8044654 - 8044606
Alignment:
| Q |
162 |
gggaaaaacccaagtaccgcatcaaatagataagacttatgataagagt |
210 |
Q |
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| T |
8044654 |
gggaaaaacccaagtcccgcatcagatagataagactcttgataagagt |
8044606 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 13 - 52
Target Start/End: Original strand, 47273731 - 47273769
Alignment:
| Q |
13 |
ctggtgttttgagttttttcatgaaggaacttgagcaaac |
52 |
Q |
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| T |
47273731 |
ctggtgttttgagtttt-tcatgaaggaacttgagcaaac |
47273769 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000002; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 152 - 210
Target Start/End: Original strand, 36878312 - 36878370
Alignment:
| Q |
152 |
caaaattatcgggaaaaacccaagtaccgcatcaaatagataagacttatgataagagt |
210 |
Q |
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| T |
36878312 |
caaaactattgggaaaaaccaaagtcccacatcagatagataagacttttgataagagt |
36878370 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 157 - 198
Target Start/End: Original strand, 13413575 - 13413616
Alignment:
| Q |
157 |
ttatcgggaaaaacccaagtaccgcatcaaatagataagact |
198 |
Q |
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| T |
13413575 |
ttattgggaaaaacccaagtcccacatcaaatagataagact |
13413616 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 162 - 210
Target Start/End: Original strand, 10668356 - 10668404
Alignment:
| Q |
162 |
gggaaaaacccaagtaccgcatcaaatagataagacttatgataagagt |
210 |
Q |
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| T |
10668356 |
gggaaaaacccaagtcccacatcaaatagataaaactcttgataagagt |
10668404 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 157 - 210
Target Start/End: Original strand, 12941561 - 12941614
Alignment:
| Q |
157 |
ttatcgggaaaaacccaagtaccgcatcaaatagataagacttatgataagagt |
210 |
Q |
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| T |
12941561 |
ttattgggaaaaacccaagtaccacatcagatagatgagactcatgatgagagt |
12941614 |
T |
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Target: chr6 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 162 - 210
Target Start/End: Original strand, 30539416 - 30539464
Alignment:
| Q |
162 |
gggaaaaacccaagtaccgcatcaaatagataagacttatgataagagt |
210 |
Q |
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||||||||||||||| || |||| ||||||||||||| |||||||||| |
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| T |
30539416 |
gggaaaaacccaagtcccacatcggatagataagacttttgataagagt |
30539464 |
T |
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