View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5491_high_15 (Length: 243)
Name: NF5491_high_15
Description: NF5491
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5491_high_15 |
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Alignment Details
Target: chr3 (Bit Score: 228; Significance: 1e-126; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 1 - 228
Target Start/End: Complemental strand, 53616792 - 53616565
Alignment:
| Q |
1 |
cgcgcgtacgcgccactgtagcaccggcgagacaaacggtaacgtaaggatcgctagtgatgattttatggtgacgatgacgtgtaagatggttttttcc |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
53616792 |
cgcgcgtacgcgccactgtagcaccggcgagacaaacggtaacgtaaggatcgctagtgatgattttatggtgacgatgacgtgtaagatggttttttcc |
53616693 |
T |
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| Q |
101 |
tttagtggtgatgttagcgctgcatgagttgaaagcggagaagaatcttctaaaacgctctgaaagcatatccatgtttggtagataacgagcttcaacg |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
53616692 |
tttagtggtgatgttagcgctgcatgagttgaaagcggagaagaatcttctaaaacgctctgaaagcatatccatgtttggtagataacgagcttcaacg |
53616593 |
T |
|
| Q |
201 |
attttcaaatcgaggttaccatgaaggt |
228 |
Q |
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|||||||||||||||||||||||||||| |
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| T |
53616592 |
attttcaaatcgaggttaccatgaaggt |
53616565 |
T |
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