View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5491_high_16 (Length: 239)

Name: NF5491_high_16
Description: NF5491
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5491_high_16
NF5491_high_16
[»] chr6 (4 HSPs)
chr6 (1-110)||(20506533-20506642)
chr6 (144-222)||(20506460-20506538)
chr6 (158-217)||(12689663-12689722)
chr6 (158-214)||(12799312-12799368)
[»] chr5 (4 HSPs)
chr5 (25-96)||(13788804-13788875)
chr5 (158-217)||(35679247-35679306)
chr5 (158-217)||(9726112-9726171)
chr5 (164-214)||(4872581-4872631)
[»] chr4 (7 HSPs)
chr4 (24-103)||(7480316-7480395)
chr4 (158-217)||(8029701-8029760)
chr4 (57-124)||(10476819-10476886)
chr4 (158-217)||(47244821-47244880)
chr4 (164-217)||(19102658-19102711)
chr4 (24-144)||(10491084-10491204)
chr4 (158-217)||(19107288-19107347)
[»] chr2 (4 HSPs)
chr2 (158-217)||(31327430-31327489)
chr2 (158-217)||(31334151-31334210)
chr2 (158-222)||(28603772-28603836)
chr2 (158-217)||(42926016-42926075)
[»] scaffold0054 (1 HSPs)
scaffold0054 (164-217)||(26133-26186)
[»] chr3 (3 HSPs)
chr3 (158-214)||(29350921-29350977)
chr3 (164-217)||(3656594-3656647)
chr3 (158-217)||(2207158-2207217)
[»] chr1 (3 HSPs)
chr1 (158-217)||(16036297-16036356)
chr1 (158-217)||(23192185-23192244)
chr1 (158-217)||(39587717-39587776)
[»] scaffold0009 (1 HSPs)
scaffold0009 (164-217)||(147756-147809)
[»] chr8 (1 HSPs)
chr8 (158-222)||(22714354-22714418)
[»] chr7 (3 HSPs)
chr7 (158-217)||(26286503-26286562)
chr7 (158-214)||(13313646-13313702)
chr7 (176-216)||(18331162-18331202)


Alignment Details
Target: chr6 (Bit Score: 94; Significance: 5e-46; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 1 - 110
Target Start/End: Complemental strand, 20506642 - 20506533
Alignment:
Q  1 ctacttatcaacacactaatacactttcttaatgaacaagtttcgtttaaatttggtccaacaaactattcggatatttccggccttatccgctcgtgtg 100  Q
    ||||||||| |||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  20506642 ctacttatcgacacactaatacactttcttaatgaataagttttgtttaaatttggtccaacaaactattcggatatttccggccttatccgctcatgtg 20506543  T
Q  101 ctctaactaa 110  Q
    ||||||||||    
T  20506542 ctctaactaa 20506533  T

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Target: chr6; HSP #2
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 144 - 222
Target Start/End: Complemental strand, 20506538 - 20506460
Alignment:
Q  144 aactaatccacggattactcaattcttaagtgtctccagatcagttgcaaactctccctataaaaggagagctcgcata 222  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  20506538 aactaatccacggattactcaattcttaagtgtctccagatcagttgcaaactctccctataaaaggagagctcgcata 20506460  T

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Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 158 - 217
Target Start/End: Complemental strand, 12689722 - 12689663
Alignment:
Q  158 ttactcaattcttaagtgtctccagatcagttgcaaactctccctataaaaggagagctc 217  Q
    ||||| ||||||||||| |||||| |||| ||  ||||||||| ||||||||||||||||    
T  12689722 ttacttaattcttaagtttctccaaatcaattataaactctccttataaaaggagagctc 12689663  T

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Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 158 - 214
Target Start/End: Original strand, 12799312 - 12799368
Alignment:
Q  158 ttactcaattcttaagtgtctccagatcagttgcaaactctccctataaaaggagag 214  Q
    ||||| ||||| | ||| |||| |||| |||| ||||||||||||||||||||||||    
T  12799312 ttacttaattcatgagtttctctagattagttacaaactctccctataaaaggagag 12799368  T

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Target: chr5 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 25 - 96
Target Start/End: Complemental strand, 13788875 - 13788804
Alignment:
Q  25 tttcttaatgaacaagtttcgtttaaatttggtccaacaaactattcggatatttccggccttatccgctcg 96  Q
    |||||||||||| |||||| |||||||| || ||||||||| |||| ||||||||| || ||||||||||||    
T  13788875 tttcttaatgaataagttttgtttaaatctgatccaacaaattatttggatatttctggtcttatccgctcg 13788804  T

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Target: chr5; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 158 - 217
Target Start/End: Original strand, 35679247 - 35679306
Alignment:
Q  158 ttactcaattcttaagtgtctccagatcagttgcaaactctccctataaaaggagagctc 217  Q
    ||||| ||||||||||| |||||| || |||| |||||||||||||||||||||||||||    
T  35679247 ttacttaattcttaagtctctccaaattagttacaaactctccctataaaaggagagctc 35679306  T

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Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 158 - 217
Target Start/End: Original strand, 9726112 - 9726171
Alignment:
Q  158 ttactcaattcttaagtgtctccagatcagttgcaaactctccctataaaaggagagctc 217  Q
    ||||| |||||| |||| |||||| || |||| |||||||||||| ||||||||||||||    
T  9726112 ttacttaattctcaagtttctccaaattagttacaaactctccctgtaaaaggagagctc 9726171  T

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Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 164 - 214
Target Start/End: Complemental strand, 4872631 - 4872581
Alignment:
Q  164 aattcttaagtgtctccagatcagttgcaaactctccctataaaaggagag 214  Q
    ||||||||||| |||||| || |||| ||||||||||||||||||| ||||    
T  4872631 aattcttaagtttctccaaattagttacaaactctccctataaaagaagag 4872581  T

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Target: chr4 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 24 - 103
Target Start/End: Original strand, 7480316 - 7480395
Alignment:
Q  24 ctttcttaatgaacaagtttcgtttaaatttggtccaacaaactattcggatatttccggccttatccgctcgtgtgctc 103  Q
    |||||||||  || || ||||||||| ||||| ||||||||||||||||||||||| ||  |||||||||||| ||||||    
T  7480316 ctttcttaacaaataattttcgtttatatttgatccaacaaactattcggatattttcgatcttatccgctcgcgtgctc 7480395  T

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Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 158 - 217
Target Start/End: Original strand, 8029701 - 8029760
Alignment:
Q  158 ttactcaattcttaagtgtctccagatcagttgcaaactctccctataaaaggagagctc 217  Q
    ||||| ||||||||||| |||||| || |||| |||||||||||||||||||||||||||    
T  8029701 ttacttaattcttaagtttctccaaattagttacaaactctccctataaaaggagagctc 8029760  T

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Target: chr4; HSP #3
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 57 - 124
Target Start/End: Original strand, 10476819 - 10476886
Alignment:
Q  57 tccaacaaactattcggatatttccggccttatccgctcgtgtgctctaactaaagcttcaaacttat 124  Q
    ||||||||||||| | ||||||||||| |||||||||||||||||||  ||| ||||||||| |||||    
T  10476819 tccaacaaactatccagatatttccggtcttatccgctcgtgtgctcgcacttaagcttcaatcttat 10476886  T

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Target: chr4; HSP #4
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 158 - 217
Target Start/End: Complemental strand, 47244880 - 47244821
Alignment:
Q  158 ttactcaattcttaagtgtctccagatcagttgcaaactctccctataaaaggagagctc 217  Q
    ||||| ||||||||||| |||||| ||||||| |||| ||||||||||||||||||||||    
T  47244880 ttacttaattcttaagtttctccaaatcagttacaaattctccctataaaaggagagctc 47244821  T

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Target: chr4; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 164 - 217
Target Start/End: Complemental strand, 19102711 - 19102658
Alignment:
Q  164 aattcttaagtgtctccagatcagttgcaaactctccctataaaaggagagctc 217  Q
    ||||||||||| |||||| || |||| |||||||||||||||||||||||||||    
T  19102711 aattcttaagtttctccaaattagttacaaactctccctataaaaggagagctc 19102658  T

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Target: chr4; HSP #6
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 24 - 144
Target Start/End: Original strand, 10491084 - 10491204
Alignment:
Q  24 ctttcttaatgaacaagtttcgtttaaatttggtccaacaaactattcggatatttccggccttatccgctcgtgtgctctaactaaagcttcaaactta 123  Q
    ||||||||||||| ||||||| ||||  | || |||| |||||||| |  ||||||| || |||||||||||||||||||  ||| ||||| ||| ||||    
T  10491084 ctttcttaatgaataagtttcatttacgtctgatccatcaaactatccaaatatttcaggtcttatccgctcgtgtgctcccacttaagctccaatctta 10491183  T
Q  124 tatgattcgcttgttacttga 144  Q
    | |||| || || ||||||||    
T  10491184 tctgatccgttttttacttga 10491204  T

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Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 158 - 217
Target Start/End: Complemental strand, 19107347 - 19107288
Alignment:
Q  158 ttactcaattcttaagtgtctccagatcagttgcaaactctccctataaaaggagagctc 217  Q
    ||||| ||||||||| | |||||| || |||| |||| ||||||||||||||||||||||    
T  19107347 ttacttaattcttaaatttctccaaattagttacaaattctccctataaaaggagagctc 19107288  T

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Target: chr2 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 158 - 217
Target Start/End: Complemental strand, 31327489 - 31327430
Alignment:
Q  158 ttactcaattcttaagtgtctccagatcagttgcaaactctccctataaaaggagagctc 217  Q
    ||||| ||||||||||| |||||| || |||| |||||||||||||||||||||||||||    
T  31327489 ttacttaattcttaagtttctccaaattagttacaaactctccctataaaaggagagctc 31327430  T

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Target: chr2; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 158 - 217
Target Start/End: Complemental strand, 31334210 - 31334151
Alignment:
Q  158 ttactcaattcttaagtgtctccagatcagttgcaaactctccctataaaaggagagctc 217  Q
    ||||| ||||||||||| |||||| || |||| |||||||||||||||||||||||||||    
T  31334210 ttacttaattcttaagtttctccaaattagttacaaactctccctataaaaggagagctc 31334151  T

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Target: chr2; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 158 - 222
Target Start/End: Complemental strand, 28603836 - 28603772
Alignment:
Q  158 ttactcaattcttaagtgtctccagatcagttgcaaactctccctataaaaggagagctcgcata 222  Q
    ||||| ||||||||||| |||||| || |||| |||||||||||||||||| |||||||| ||||    
T  28603836 ttacttaattcttaagtttctccaaattagttacaaactctccctataaaaagagagctcacata 28603772  T

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Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 158 - 217
Target Start/End: Original strand, 42926016 - 42926075
Alignment:
Q  158 ttactcaattcttaagtgtctccagatcagttgcaaactctccctataaaaggagagctc 217  Q
    ||||| ||||||||| | |||| | || |||| |||||||||||||||||||||||||||    
T  42926016 ttacttaattcttaaatttctctaaattagttacaaactctccctataaaaggagagctc 42926075  T

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Target: scaffold0054 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: scaffold0054
Description:

Target: scaffold0054; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 164 - 217
Target Start/End: Complemental strand, 26186 - 26133
Alignment:
Q  164 aattcttaagtgtctccagatcagttgcaaactctccctataaaaggagagctc 217  Q
    ||||||||||| |||||| || |||| |||||||||||||||||||||||||||    
T  26186 aattcttaagtttctccaaattagttacaaactctccctataaaaggagagctc 26133  T

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Target: chr3 (Bit Score: 37; Significance: 0.000000000005; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 158 - 214
Target Start/End: Complemental strand, 29350977 - 29350921
Alignment:
Q  158 ttactcaattcttaagtgtctccagatcagttgcaaactctccctataaaaggagag 214  Q
    ||||| ||||||||||| |||||| || |||| ||||||||||||||||||||||||    
T  29350977 ttacttaattcttaagtttctccaaattagttacaaactctccctataaaaggagag 29350921  T

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Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 164 - 217
Target Start/End: Original strand, 3656594 - 3656647
Alignment:
Q  164 aattcttaagtgtctccagatcagttgcaaactctccctataaaaggagagctc 217  Q
    ||||||||||| || ||| || |||| |||||||||||||||||||||||||||    
T  3656594 aattcttaagtttcaccaaattagttacaaactctccctataaaaggagagctc 3656647  T

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Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 158 - 217
Target Start/End: Original strand, 2207158 - 2207217
Alignment:
Q  158 ttactcaattcttaagtgtctccagatcagttgcaaactctccctataaaaggagagctc 217  Q
    ||||| |||| |||||| ||| || ||||||| |||||||||||| ||||||||||||||    
T  2207158 ttacttaattattaagtttcttcaaatcagttacaaactctccctgtaaaaggagagctc 2207217  T

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Target: chr1 (Bit Score: 36; Significance: 0.00000000002; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 158 - 217
Target Start/End: Complemental strand, 16036356 - 16036297
Alignment:
Q  158 ttactcaattcttaagtgtctccagatcagttgcaaactctccctataaaaggagagctc 217  Q
    ||||| ||||||||||| |||||| || |||| ||||||||||||||||||| |||||||    
T  16036356 ttacttaattcttaagtttctccaaattagttacaaactctccctataaaagcagagctc 16036297  T

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Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 158 - 217
Target Start/End: Original strand, 23192185 - 23192244
Alignment:
Q  158 ttactcaattcttaagtgtctccagatcagttgcaaactctccctataaaaggagagctc 217  Q
    ||||| ||||||| ||| |||||| || |||| |||||||||||||||||||||||||||    
T  23192185 ttacttaattctttagtttctccaaattagttacaaactctccctataaaaggagagctc 23192244  T

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Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 158 - 217
Target Start/End: Original strand, 39587717 - 39587776
Alignment:
Q  158 ttactcaattcttaagtgtctccagatcagttgcaaactctccctataaaaggagagctc 217  Q
    ||||| |||||||| || |||||| || |||| |||||||||||| ||||||||||||||    
T  39587717 ttacttaattcttatgtttctccaaattagttacaaactctccctgtaaaaggagagctc 39587776  T

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Target: scaffold0009 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 164 - 217
Target Start/End: Original strand, 147756 - 147809
Alignment:
Q  164 aattcttaagtgtctccagatcagttgcaaactctccctataaaaggagagctc 217  Q
    ||||||||||| |||||| || |||| |||||||||| ||||||||||||||||    
T  147756 aattcttaagtttctccaaattagttacaaactctccatataaaaggagagctc 147809  T

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Target: chr8 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 158 - 222
Target Start/End: Original strand, 22714354 - 22714418
Alignment:
Q  158 ttactcaattcttaagtgtctccagatcagttgcaaactctccctataaaaggagagctcgcata 222  Q
    ||||| ||||||||||| |||||| || | || ||||||| ||||||||||||||||||| ||||    
T  22714354 ttacttaattcttaagtttctccaaattatttacaaactccccctataaaaggagagctcacata 22714418  T

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Target: chr7 (Bit Score: 32; Significance: 0.000000005; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 158 - 217
Target Start/End: Original strand, 26286503 - 26286562
Alignment:
Q  158 ttactcaattcttaagtgtctccagatcagttgcaaactctccctataaaaggagagctc 217  Q
    ||||| ||||||||||| |||||| || |||| |||||||||| | ||||||||||||||    
T  26286503 ttacttaattcttaagtttctccaaattagttacaaactctccttgtaaaaggagagctc 26286562  T

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Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 158 - 214
Target Start/End: Original strand, 13313646 - 13313702
Alignment:
Q  158 ttactcaattcttaagtgtctccagatcagttgcaaactctccctataaaaggagag 214  Q
    ||||| ||||||||||| |||||| || |||| |||||||| ||||||||| |||||    
T  13313646 ttacttaattcttaagtttctccaaattagttacaaactcttcctataaaatgagag 13313702  T

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Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 176 - 216
Target Start/End: Original strand, 18331162 - 18331202
Alignment:
Q  176 tctccagatcagttgcaaactctccctataaaaggagagct 216  Q
    |||||||| |||||||||| |||| ||||||||||||||||    
T  18331162 tctccagaccagttgcaaattctcgctataaaaggagagct 18331202  T

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