View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5491_high_18 (Length: 226)
Name: NF5491_high_18
Description: NF5491
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5491_high_18 |
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Alignment Details
Target: chr5 (Bit Score: 208; Significance: 1e-114; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 1 - 216
Target Start/End: Complemental strand, 17975819 - 17975604
Alignment:
| Q |
1 |
ccaatagtgatatttcctaagaaatggttaagaaacttttaagcaattcctgttgtaaaaatattatgtaggatcttgattcaaaagaaacctttgactt |
100 |
Q |
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| T |
17975819 |
ccaatagtgatatttcctaagaaatggttaagaaacttttaagcaattcctgttgtaaaaatattatgtaggatcttgattcaaaagaaacctttgactt |
17975720 |
T |
|
| Q |
101 |
gtagatgcatactataccttatcagatattttaaatgattgatactggatactcatcgtttttcatctcaatatcatcataggttaaatgggatgaacct |
200 |
Q |
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|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
17975719 |
gtagatgcatactataccttgtcagatattttaaatgattgatactggatactcatcgtttttcatctcaatatcatcataggttaaatgggatgaacct |
17975620 |
T |
|
| Q |
201 |
aaagtctcacaggttc |
216 |
Q |
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|||||||| ||||||| |
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| T |
17975619 |
aaagtctcgcaggttc |
17975604 |
T |
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