View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5491_high_3 (Length: 456)
Name: NF5491_high_3
Description: NF5491
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5491_high_3 |
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Alignment Details
Target: chr1 (Bit Score: 146; Significance: 1e-76; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 146; E-Value: 1e-76
Query Start/End: Original strand, 11 - 219
Target Start/End: Complemental strand, 4793274 - 4793074
Alignment:
| Q |
11 |
caaaggaaatgatagaaattaaaggaagtgaaaatgttaaagagcgattggattttgcattcatttaaagtaataannnnnnncttaattaaatcgcagg |
110 |
Q |
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| T |
4793274 |
caaaggaaatgatag-----aaaggaagtgaaaatgttaaagagcgattggattttgcattcaattaaagtaataatttttttcttaattaaatcgcagg |
4793180 |
T |
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| Q |
111 |
ttttctctattcaccggtgccgatctcggcaatgccgcccgtggttgcattcacatttgttttcatgtattattacatgcttcctatggtatatagttgg |
210 |
Q |
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| T |
4793179 |
ttttctctattcaccggtgccgatctcggcaatgccgcccgtggttgcattcacattagttttcatg---tattacatgcttcctatggtatatagttgg |
4793083 |
T |
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| Q |
211 |
accacgagg |
219 |
Q |
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||||||||| |
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| T |
4793082 |
accacgagg |
4793074 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 106; E-Value: 7e-53
Query Start/End: Original strand, 333 - 438
Target Start/End: Complemental strand, 4792095 - 4791990
Alignment:
| Q |
333 |
atacgaataatccaaatgatatatctatatattaacattaataatcatcaaaataacctaacttacattctaattagtaatgaatcctaatattaaatat |
432 |
Q |
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| T |
4792095 |
atacgaataatccaaatgatatatctatatattaacattaataatcatcaaaataacctaacttacattctaattagtaatgaatcctaatattaaatat |
4791996 |
T |
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| Q |
433 |
aaacaa |
438 |
Q |
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|||||| |
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| T |
4791995 |
aaacaa |
4791990 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 217 - 309
Target Start/End: Complemental strand, 4793023 - 4792931
Alignment:
| Q |
217 |
aggaggggcgttgatctttggctatttctacatagcactcatgttgactgcaattcatttcccagtgaaattcaaacactaggaaattatttg |
309 |
Q |
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| T |
4793023 |
aggaggggcgttgatctttggctatttctacatagcactcatgttgactgcaattcatttcctagtgaaattcaaacactaggaaatgatttg |
4792931 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 373 - 423
Target Start/End: Original strand, 4788326 - 4788376
Alignment:
| Q |
373 |
ataatcatcaaaataacctaacttacattctaattagtaatgaatcctaat |
423 |
Q |
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| T |
4788326 |
ataatcatcaaaataccctaacttacattttaattagtaatgaatcctaat |
4788376 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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