View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5491_high_6 (Length: 385)

Name: NF5491_high_6
Description: NF5491
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5491_high_6
NF5491_high_6
[»] chr2 (3 HSPs)
chr2 (162-295)||(18071667-18071798)
chr2 (20-108)||(18071854-18071942)
chr2 (303-369)||(18071562-18071628)
[»] chr5 (2 HSPs)
chr5 (179-285)||(38628431-38628535)
chr5 (20-108)||(38628217-38628305)
[»] chr3 (6 HSPs)
chr3 (176-285)||(14893454-14893560)
chr3 (176-263)||(43363519-43363606)
chr3 (37-108)||(49716504-49716575)
chr3 (274-362)||(14893575-14893665)
chr3 (303-358)||(49716288-49716345)
chr3 (68-110)||(14871080-14871122)
[»] scaffold0001 (2 HSPs)
scaffold0001 (180-282)||(406426-406528)
scaffold0001 (20-108)||(406251-406339)
[»] chr1 (3 HSPs)
chr1 (178-285)||(20101493-20101598)
chr1 (303-365)||(20101379-20101443)
chr1 (20-107)||(20101715-20101801)
[»] chr4 (3 HSPs)
chr4 (182-288)||(52701519-52701614)
chr4 (274-365)||(52701623-52701716)
chr4 (16-101)||(52701330-52701415)
[»] scaffold0756 (2 HSPs)
scaffold0756 (303-365)||(854-918)
scaffold0756 (20-108)||(711-799)
[»] chr7 (2 HSPs)
chr7 (20-107)||(7124904-7124991)
chr7 (20-109)||(28915715-28915804)
[»] chr8 (2 HSPs)
chr8 (20-110)||(1294952-1295042)
chr8 (178-253)||(1295151-1295223)


Alignment Details
Target: chr2 (Bit Score: 119; Significance: 1e-60; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 162 - 295
Target Start/End: Complemental strand, 18071798 - 18071667
Alignment:
Q  162 gaccgctttgaacatgacagaaattgaatgtgcatttatagaaaaaatatttgctgtaaaacctagaagaagaaaaaataacacaaatcttaaacattta 261  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||      
T  18071798 gaccgctttgaatatgacagaaattgaatgtgcatttatagaaaaaatatttgctgtaaaacctagaagaagaaaaaataacacaaatcttaaacatt-- 18071701  T
Q  262 tatagtaaatataaaatggaaactacaatcatag 295  Q
    ||||||||||||||||||||||||||||||||||    
T  18071700 tatagtaaatataaaatggaaactacaatcatag 18071667  T

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Target: chr2; HSP #2
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 20 - 108
Target Start/End: Complemental strand, 18071942 - 18071854
Alignment:
Q  20 gacacgatatgagtattggatacgacgcgtatccaatacggcaatacgtcattcattgaaaaacataagattcgatacgtttaagatac 108  Q
    ||||||||| |||||||||||||||||||||||||||||||| |||||||||||||| ||||| ||| |||||||||||||| ||||||    
T  18071942 gacacgatacgagtattggatacgacgcgtatccaatacggcgatacgtcattcattaaaaaatataggattcgatacgtttgagatac 18071854  T

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Target: chr2; HSP #3
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 303 - 369
Target Start/End: Complemental strand, 18071628 - 18071562
Alignment:
Q  303 tacaattgaatggacaactggttaaatgtatcaactatattaaagaaaagaaaaacgtatctgtaat 369  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  18071628 tacaattgaatggacaactggttaaatgtatcaactatattaaagaaaagaaaaacgtatatgtaat 18071562  T

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Target: chr5 (Bit Score: 72; Significance: 1e-32; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 179 - 285
Target Start/End: Original strand, 38628431 - 38628535
Alignment:
Q  179 cagaaattgaatgtgcatttatagaaaaaatatttgctgtaaaacctagaagaagaaaaaataacacaaatcttaaacatttatatagtaaatataaaat 278  Q
    |||||||||||||||||| |||||||||||||||| | |||||||||||||||| || |||||||||| ||||||||||||  |||||||||||||||||    
T  38628431 cagaaattgaatgtgcatatatagaaaaaatatttaccgtaaaacctagaagaaaaagaaataacacagatcttaaacatt--tatagtaaatataaaat 38628528  T
Q  279 ggaaact 285  Q
    |||||||    
T  38628529 ggaaact 38628535  T

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Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 20 - 108
Target Start/End: Original strand, 38628217 - 38628305
Alignment:
Q  20 gacacgatatgagtattggatacgacgcgtatccaatacggcaatacgtcattcattgaaaaacataagattcgatacgtttaagatac 108  Q
    |||||||| ||||||| ||||||||||| ||||| | ||||| ||||||||||||| ||||||  || ||| | |||||||| ||||||    
T  38628217 gacacgatttgagtatcggatacgacgcatatccgacacggcgatacgtcattcatagaaaaatgtaggatacaatacgtttgagatac 38628305  T

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Target: chr3 (Bit Score: 71; Significance: 5e-32; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 176 - 285
Target Start/End: Original strand, 14893454 - 14893560
Alignment:
Q  176 tgacagaaattgaatgtgcatttatagaaaaaatatttgctgtaaaacctagaagaagaaaaaataacacaaatcttaaacatttatatagtaaatataa 275  Q
    |||||||| ||||||||||||||||| ||||||||||| |  ||||||||||||||||||||||||||||| ||||||||||||  ||||||||||||||    
T  14893454 tgacagaagttgaatgtgcatttata-aaaaaatatttacgttaaaacctagaagaagaaaaaataacacagatcttaaacatt--tatagtaaatataa 14893550  T
Q  276 aatggaaact 285  Q
    ||||||||||    
T  14893551 aatggaaact 14893560  T

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Target: chr3; HSP #2
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 176 - 263
Target Start/End: Original strand, 43363519 - 43363606
Alignment:
Q  176 tgacagaaattgaatgtgcatttatagaaaaaatatttgctgtaaaacctagaagaagaaaaaataacacaaatcttaaacatttata 263  Q
    ||||| ||||||||||||| ||| |||||||||||||| | |||||||||||||||||||||||||||||| ||||||||||||||||    
T  43363519 tgacaaaaattgaatgtgcgtttttagaaaaaatattttccgtaaaacctagaagaagaaaaaataacacatatcttaaacatttata 43363606  T

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Target: chr3; HSP #3
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 37 - 108
Target Start/End: Complemental strand, 49716575 - 49716504
Alignment:
Q  37 ggatacgacgcgtatccaatacggcaatacgtcattcattgaaaaacataagattcgatacgtttaagatac 108  Q
    |||||||||||||| || ||||||| ||||||| |||||||||||||||| ||| |||||||||| ||||||    
T  49716575 ggatacgacgcgtacccgatacggcgatacgtcgttcattgaaaaacataggatacgatacgtttgagatac 49716504  T

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Target: chr3; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 274 - 362
Target Start/End: Original strand, 14893575 - 14893665
Alignment:
Q  274 aaaatggaaactacaatcatagatgaatatacaattgaatggacaactggttaaatgtatcaactat--attaaagaaaagaaaaacgtat 362  Q
    |||||||||||| |||||| || | ||| || ||||||||| | |||  ||||||||||||||||||  ||||||||||||||||||||||    
T  14893575 aaaatggaaactgcaatcaaaggttaatgtaaaattgaatgaaaaaccagttaaatgtatcaactatcaattaaagaaaagaaaaacgtat 14893665  T

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Target: chr3; HSP #5
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 303 - 358
Target Start/End: Complemental strand, 49716345 - 49716288
Alignment:
Q  303 tacaattgaatggacaactggttaaatgtatcaactat--attaaagaaaagaaaaac 358  Q
    ||||||||||||| ||||||||||||||||||||||||  ||||||| ||||||||||    
T  49716345 tacaattgaatgggcaactggttaaatgtatcaactatcaattaaagtaaagaaaaac 49716288  T

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Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 68 - 110
Target Start/End: Original strand, 14871080 - 14871122
Alignment:
Q  68 tcattcattgaaaaacataagattcgatacgtttaagatacac 110  Q
    ||||||||||||||||||| ||| |||||||||| ||||||||    
T  14871080 tcattcattgaaaaacataggatacgatacgtttgagatacac 14871122  T

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Target: scaffold0001 (Bit Score: 61; Significance: 4e-26; HSPs: 2)
Name: scaffold0001
Description:

Target: scaffold0001; HSP #1
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 180 - 282
Target Start/End: Original strand, 406426 - 406528
Alignment:
Q  180 agaaattgaatgtgcatttatagaaaaaatatttgctgtaaaacctagaagaagaaaaa---ataacacaaatcttaaacatttatatagtaaatataaa 276  Q
    |||||||||||||||||||||||||||| ||||| | ||||||||||||||||||||||   |||||||||||||||||||||  ||| |||||||||||    
T  406426 agaaattgaatgtgcatttatagaaaaa-tatttacggtaaaacctagaagaagaaaaataaataacacaaatcttaaacatt--tatcgtaaatataaa 406522  T
Q  277 atggaa 282  Q
    ||||||    
T  406523 atggaa 406528  T

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Target: scaffold0001; HSP #2
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 20 - 108
Target Start/End: Original strand, 406251 - 406339
Alignment:
Q  20 gacacgatatgagtattggatacgacgcgtatccaatacggcaatacgtcattcattgaaaaacataagattcgatacgtttaagatac 108  Q
    ||||||||| |||||| ||||||||| |  |||| ||||||| ||||||||||||||| |||||||| ||| | |||| ||| ||||||    
T  406251 gacacgatacgagtatcggatacgacacacatccgatacggcgatacgtcattcattggaaaacataggatacaatacatttgagatac 406339  T

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Target: chr1 (Bit Score: 57; Significance: 1e-23; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 178 - 285
Target Start/End: Complemental strand, 20101598 - 20101493
Alignment:
Q  178 acagaaattgaatgtgcatttatagaaaaaatatttgctgtaaaacctagaagaagaaaaaataacacaaatcttaaacatttatatagtaaatataaaa 277  Q
    |||||||||||||||||||||||||||||||||| | | |||||| ||| |||||||||| |||||||  |||| |||||||  ||||||||||||||||    
T  20101598 acagaaattgaatgtgcatttatagaaaaaatatataccgtaaaatctacaagaagaaaagataacacgtatctcaaacatt--tatagtaaatataaaa 20101501  T
Q  278 tggaaact 285  Q
    || |||||    
T  20101500 tgaaaact 20101493  T

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Target: chr1; HSP #2
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 303 - 365
Target Start/End: Complemental strand, 20101443 - 20101379
Alignment:
Q  303 tacaattgaatggacaactggttaaatgtatcaactat--attaaagaaaagaaaaacgtatctg 365  Q
    |||||||||||||||| || ||||||||||||||||||  |||||||||||||||||| ||||||    
T  20101443 tacaattgaatggacatcttgttaaatgtatcaactatcaattaaagaaaagaaaaacttatctg 20101379  T

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Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 20 - 107
Target Start/End: Complemental strand, 20101801 - 20101715
Alignment:
Q  20 gacacgatatgagtattggatacgacgcgtatccaatacggcaatacgtcattcattgaaaaacataagattcgatacgtttaagata 107  Q
    |||| |||| |||||| |||||| || ||||||| | ||||| ||||| |||||| ||||||||||| ||| |||||||||| |||||    
T  20101801 gacatgatacgagtatcggatac-acacgtatccgacacggcgatacgacattcactgaaaaacataggatacgatacgtttgagata 20101715  T

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Target: chr4 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 182 - 288
Target Start/End: Original strand, 52701519 - 52701614
Alignment:
Q  182 aaattgaatgtgcatttatagaaaaaatatttgctgtaaaacctagaagaagaaaaaataacacaaatcttaaacatttatatagtaaatataaaatgga 281  Q
    ||||||||||||||||||||||||| |||||| ||     |||    ||||||||| |||||||| ||||||||||||  ||||||||||||||||||||    
T  52701519 aaattgaatgtgcatttatagaaaagatatttact-----acc----agaagaaaagataacacatatcttaaacatt--tatagtaaatataaaatgga 52701607  T

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Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 274 - 365
Target Start/End: Original strand, 52701623 - 52701716
Alignment:
Q  274 aaaatggaaactacaatcatagatgaatatacaattgaatggacaactggttaaatgtatcaactat--attaaagaaaagaaaaacgtatctg 365  Q
    |||||||||||| ||||  ||| | ||| || ||||||||||||| || ||||||||||||||||||  |||||| |||||||||  |||||||    
T  52701623 aaaatggaaactgcaatagtaggttaatgtataattgaatggacatcttgttaaatgtatcaactatcaattaaataaaagaaaactgtatctg 52701716  T

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Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 16 - 101
Target Start/End: Original strand, 52701330 - 52701415
Alignment:
Q  16 cacagacacgatatgagtattggatacgacgcgtatccaatacggcaatacgtcattcattgaaaaacataagattcgatacgttt 101  Q
    |||| |||||||| ||||||||||||||| || ||||| | ||| | |||||  ||||||||||||| ||| ||| ||||| ||||    
T  52701330 cacaaacacgataggagtattggatacgatgcatatccgacacgacgatacgatattcattgaaaaatataggatacgatatgttt 52701415  T

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Target: scaffold0756 (Bit Score: 42; Significance: 0.000000000000009; HSPs: 2)
Name: scaffold0756
Description:

Target: scaffold0756; HSP #1
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 303 - 365
Target Start/End: Original strand, 854 - 918
Alignment:
Q  303 tacaattgaatggacaactggttaaatgtatcaactat--attaaagaaaagaaaaacgtatctg 365  Q
    |||||||||||||||| || ||||||||||||||||||  |||||||||||||||||| ||||||    
T  854 tacaattgaatggacatcttgttaaatgtatcaactatcaattaaagaaaagaaaaacttatctg 918  T

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Target: scaffold0756; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 20 - 108
Target Start/End: Original strand, 711 - 799
Alignment:
Q  20 gacacgatatgagtattggatacgacgcgtatccaatacggcaatacgtcattcattgaaaaacataagattcgatacgtttaagatac 108  Q
    |||| |||| |||||| |||||| |||||||||| | ||||| ||||| |||||||||||||||||| ||| | |||||||| ||||||    
T  711 gacatgatacgagtatcggatacaacgcgtatccgacacggcgatacgacattcattgaaaaacataggatactatacgtttgagatac 799  T

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Target: chr7 (Bit Score: 36; Significance: 0.00000000004; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 20 - 107
Target Start/End: Complemental strand, 7124991 - 7124904
Alignment:
Q  20 gacacgatatgagtattggatacgacgcgtatccaatacggcaatacgtcattcattgaaaaacataagattcgatacgtttaagata 107  Q
    ||||||||| | |||| |||||||| |||||| | ||||||| |||||||| ||||||||||  ||| ||| | ||||||||||||||    
T  7124991 gacacgatacgtgtatcggatacgatgcgtattcgatacggcgatacgtcagtcattgaaaattataggatacaatacgtttaagata 7124904  T

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Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 20 - 109
Target Start/End: Complemental strand, 28915804 - 28915715
Alignment:
Q  20 gacacgatatgagtattggatacgacgcgtatccaatacggcaatacgtcattcattgaaaaacataagattcgatacgtttaagataca 109  Q
    ||||||||| | |||| |||||||   ||||||| ||||||| ||| ||||   ||||||||||||| ||| ||||||||||||||||||    
T  28915804 gacacgatacgtgtatcggatacgttacgtatccgatacggcgatatgtcaaaaattgaaaaacataggatacgatacgtttaagataca 28915715  T

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Target: chr8 (Bit Score: 35; Significance: 0.0000000001; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 20 - 110
Target Start/End: Original strand, 1294952 - 1295042
Alignment:
Q  20 gacacgatatgagtattggatacgacgcgtatccaatacggcaatacgtcattcattgaaaaacataagattcgatacgtttaagatacac 110  Q
    ||||| ||||||||||  |||||||| ||||||| ||| |  |||||||||||||||||| || ||| |||  ||||||||| ||||||||    
T  1294952 gacacaatatgagtatcagatacgacacgtatccgataggttaatacgtcattcattgaataatataggatatgatacgtttcagatacac 1295042  T

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Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 178 - 253
Target Start/End: Original strand, 1295151 - 1295223
Alignment:
Q  178 acagaaattgaatgtgcatttatagaaaaaatatttgctgtaaaacctagaagaagaaaaaataacacaaatctta 253  Q
    ||||||||||||||  ||||||||||||| |||||| |  ||||||||   |||||||||||||||||| ||||||    
T  1295151 acagaaattgaatgaacatttatagaaaatatatttacattaaaacct---agaagaaaaaataacacagatctta 1295223  T

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