View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5491_low_1 (Length: 522)
Name: NF5491_low_1
Description: NF5491
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5491_low_1 |
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Alignment Details
Target: chr3 (Bit Score: 461; Significance: 0; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 461; E-Value: 0
Query Start/End: Original strand, 19 - 503
Target Start/End: Complemental strand, 5364755 - 5364271
Alignment:
| Q |
19 |
gaaatcataaaagataaactgaaaattaggataaaagatttgagtctaaaactgataattaagatattgttgttataattagagaggagtgctagaaaca |
118 |
Q |
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| T |
5364755 |
gaaatcataaaagataaactgaaaattaggataaaagatttgagtctaaaattgataattaagatattgttgttataattagagaggagtgctagaaaca |
5364656 |
T |
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| Q |
119 |
ctcgcactgcaacacctctgcttaacgactcagcagaacagtgaggagatggaacattttctttaccttttggtagcttgtacaaaactcagttctagag |
218 |
Q |
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| T |
5364655 |
ctcgcactgcaacacctctgctcaacgactcaacagaacagtgaggagatggaacattttctttaccttttggtagcttatacaaaactcagttctagag |
5364556 |
T |
|
| Q |
219 |
ataacatctgcactaagtttgatcgtgtacttcccaaaatcggtttgaccacacttcaaccaattttacaatgactgtagcatctttttagtgcatttcc |
318 |
Q |
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| T |
5364555 |
ataacatctgcactaagtttgatcgtgtacttcccaaaatcggtttgaccacacttcaaccaattttataatgactgtagcatctttttagtgcatttcc |
5364456 |
T |
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| Q |
319 |
accttatgtctagctctgcaaataacatgttcattagtttttgcaaaccaatcattattttaatgtgtgtcaaagtgaccgacacatgacagtgtcctcg |
418 |
Q |
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| T |
5364455 |
accttacgtctagctctgcaaataacatgttcattagtttttgcaaaccaatcattattttaatgtgtgtcaaagtgaccgacacatgacagtgtcctcg |
5364356 |
T |
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| Q |
419 |
tattaacgacacctacaagtatgattataaaaagttaacccaaataacaagatgtaaacttttcatggttgaatcatacatatca |
503 |
Q |
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| T |
5364355 |
tattaacgacacctacaagtatgattataaaaagttaacccaaataacaagatgtaaacttttcatggttgaatcatacatatca |
5364271 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 294 - 495
Target Start/End: Complemental strand, 5370458 - 5370259
Alignment:
| Q |
294 |
tgtagcatctttttagtgcatttccaccttatgtctagctctgcaaataacatgttcat-tagtttttgcaaaccaatcattattttaatgtgtgtcaaa |
392 |
Q |
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|||||||||| ||||||||||| |||||||||||||||||| ||||||||||||||||| | ||| | ||||||| ||| |||||| ||||| ||| |
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| T |
5370458 |
tgtagcatctctttagtgcatt-ccaccttatgtctagctcggcaaataacatgttcatcaaatttctaaaaaccaaccatatttttaagatgtgtgaaa |
5370360 |
T |
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| Q |
393 |
gtgaccgacacatgacagtgtcctcgtattaacgacacctacaagtatgattataaaaagttaacccaaataacaagatgtaaacttttcatggttgaat |
492 |
Q |
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| T |
5370359 |
gtacctgacac--gtcagtgtcttcgtaagaacgacactgacaagtgtgattagaaaaagtaacttcaaataactagatgtaagcttttcatggttgaat |
5370262 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 101 - 222
Target Start/End: Complemental strand, 5376114 - 5375993
Alignment:
| Q |
101 |
agaggagtgctagaaacactcgcactgcaacacct-ctgcttaacgactcagcagaacagtgaggagatggaacattttctttaccttttggtagcttgt |
199 |
Q |
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||||||||||||||||||||| | |||| ||| | ||||| ||||| || ||| ||| |||||||||||||||||||||||| | ||||||||| ||| |
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| T |
5376114 |
agaggagtgctagaaacactcactttgcaccacatgctgctcaacgagtcggcaaaactgtgaggagatggaacattttctttcctttttggtagtttgc |
5376015 |
T |
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| Q |
200 |
acaaaactcagttctagagataa |
222 |
Q |
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| T |
5376014 |
ac-aaactcagctctagagataa |
5375993 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 54; Significance: 9e-22; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 153 - 238
Target Start/End: Complemental strand, 1267288 - 1267203
Alignment:
| Q |
153 |
agaacagtgaggagatggaacattttctttaccttttggtagcttgtacaaaactcagttctagagataacatctgcactaagttt |
238 |
Q |
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| T |
1267288 |
agaactgtgaggagatggaatattttccttcccttttggtagcttgcaccaaactcagttctagagataatatctgcagtaagttt |
1267203 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 36; Significance: 0.00000000005; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 159 - 230
Target Start/End: Complemental strand, 6972492 - 6972421
Alignment:
| Q |
159 |
gtgaggagatggaacattttctttaccttttggtagcttgtacaaaactcagttctagagataacatctgca |
230 |
Q |
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|||||||| || || |||| |||| |||||| ||||||||||| |||||||||| ||||||||| ||||||| |
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| T |
6972492 |
gtgaggaggtgaaatatttgctttccctttttgtagcttgtactaaactcagttttagagataatatctgca |
6972421 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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