View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5491_low_2 (Length: 518)
Name: NF5491_low_2
Description: NF5491
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5491_low_2 |
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Alignment Details
Target: chr6 (Bit Score: 430; Significance: 0; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 430; E-Value: 0
Query Start/End: Original strand, 9 - 498
Target Start/End: Original strand, 18254951 - 18255440
Alignment:
| Q |
9 |
gaagaatatgaaggttgataagaaaataatcnnnnnnnncataaccctccgattctcagaagttcgaatttggattctctagaacaacctgtcgttaact |
108 |
Q |
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| T |
18254951 |
gaagaatatgaaggttgataagaaaataatcttttttttcataaccctccgattctcagaagttcgaatttggattctccagaacaacctgtcgttaact |
18255050 |
T |
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| Q |
109 |
aaaactaatcgacaacttgagtctaacataatgctcggacattctgctagttgtaattgattaatataatattagtaagaagagaattatctgaatttgg |
208 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
18255051 |
aaaactaatcgacaacttgagtctaacataatgctcggacattctgctaatcgtaattgattaatataatattagtaagaagagaattatctaaatttgg |
18255150 |
T |
|
| Q |
209 |
tttatgattttctttttggttaacagagtaggtgaaaattggccactatatgatatactgaatcaattcaagaagggtcaaagtcacatggctgttgttc |
308 |
Q |
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| T |
18255151 |
tttatgattttctttttggttaacagagtaggtgaaaattggccactatatgatatactgaatcaattcaagaagggtcaaagtcacatggctgttgttc |
18255250 |
T |
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| Q |
309 |
tcaggagtaaagagaacattagaactgctgcatctaatacagaaggtagaacttctagcctacacaagttattttcattcaaaattgtttagatcccatc |
408 |
Q |
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||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||| || |
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| T |
18255251 |
tcaagagtaaagagaacattagaactgctgcaactaatacagaaggtagaacttctagcctacacgagttattttcattcaaaattgtttagaccccgtc |
18255350 |
T |
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| Q |
409 |
tttcaaaagtacaaactcgcggtgtttaatgttcttacgataagatggtgatttaatccgtgccggtttgacaaaagaaataaaaagtta |
498 |
Q |
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| T |
18255351 |
tttcaaaagtacaaactcgcggtgtttaatgttcttacgataagatggtgatttaatccgtgccggtttgacaaaagaaataaaaagtta |
18255440 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 241 - 306
Target Start/End: Complemental strand, 18052647 - 18052582
Alignment:
| Q |
241 |
tgaaaattggccactatatgatatactgaatcaattcaagaagggtcaaagtcacatggctgttgt |
306 |
Q |
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||||| ||||||||||||||| ||| |||||||||||||||||||||| || || ||||||||||| |
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| T |
18052647 |
tgaaagttggccactatatgaaatattgaatcaattcaagaagggtcatagccatatggctgttgt |
18052582 |
T |
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