View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5491_low_4 (Length: 415)
Name: NF5491_low_4
Description: NF5491
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5491_low_4 |
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Alignment Details
Target: chr1 (Bit Score: 366; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 366; E-Value: 0
Query Start/End: Original strand, 17 - 406
Target Start/End: Original strand, 31710873 - 31711262
Alignment:
| Q |
17 |
caaagaagctacaatacaactcaataattcagaatctatctagcttgtgtcaccccttcccaacatagtcataaaacttcattccatatttgggagattg |
116 |
Q |
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||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31710873 |
caaaggagctacaatacaactcaataattcagaatctatctagcttgtgtcaccccttcccaacatagtcataaaacttcattccatatttgggagattg |
31710972 |
T |
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| Q |
117 |
aagttgattttcttccaggaaaaactatttgaaactctaaagctagattcagtttcaccactacattacacaaatgaaaagccatggtcacaataaatgt |
216 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
31710973 |
aagttgattttcttccagaaaaaactatttgaaactctaaagctagattcagtttcaccactacattacacaaatgaaaagctatggtcacaataaatgt |
31711072 |
T |
|
| Q |
217 |
gtttcctttatttgaatacatgatgacatcaccaaaatagacattttggtttgaataggtaaactatttgtatgatattggaggatttcaaggaaggtcc |
316 |
Q |
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|||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31711073 |
gtttcctttatttgaatacacgatgacatcaccaaaatagacattttggtttcaataggtaaactatttgtatgatattggaggatttcaaggaaggtcc |
31711172 |
T |
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| Q |
317 |
tgtttggaagagaggaatcagtgatctctgacactatgatagcaaaatatgagagaggtttataggcattgagagtgagttgagaataat |
406 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
31711173 |
tgtttggaagagaggaatcagtgatctctgacactatgatagcaaaatatgagagaggtttataggcattgagagtgagttgagagtaat |
31711262 |
T |
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