View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5491_low_5 (Length: 398)
Name: NF5491_low_5
Description: NF5491
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5491_low_5 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 234; Significance: 1e-129; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 20 - 333
Target Start/End: Original strand, 40053355 - 40053676
Alignment:
| Q |
20 |
aagacatacaccgtacatattaacatagttagagaagatttaagacggataaattgagacagatgctcagacacaagagctgatactgtagaagcaaaac |
119 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
40053355 |
aagacatacaccgtacatattaacatagttagagaagatttaagacggataaattgagacagatgctcagacacaagagctgatattgtagaagcaaaac |
40053454 |
T |
|
| Q |
120 |
tcatagttcctcttagtataagaaaaattggctacatagcgtc--------cttgtttctagcaacataaattttgcctaaaatctattcataattctgc |
211 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||| |||| |
|
|
| T |
40053455 |
tcatagttcctcttagtataagaaaaattggctacatagcgtccttgtttgcttgtttctagcaacataaattttgcctaaaatctattcctaagactgc |
40053554 |
T |
|
| Q |
212 |
gtgataattttcaagttatgtttgttcctaagtatacattagtattgccnnnnnnnnnnnnnataaagaagtaagtgaaacaaagtttcaaatctatcaa |
311 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40053555 |
gtgataattttgaagttatgtttgttcctaagtatacattagtattgccttttttctttcttataaagaagtaagtgaaacaaagtttcaaatctatcaa |
40053654 |
T |
|
| Q |
312 |
ctaagtccctcttagtaccccc |
333 |
Q |
| |
|
|||||||||||||||||||||| |
|
|
| T |
40053655 |
ctaagtccctcttagtaccccc |
40053676 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 47; Significance: 1e-17; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 101 - 200
Target Start/End: Complemental strand, 49107749 - 49107642
Alignment:
| Q |
101 |
gatactgtagaagcaaaactcatagttcctcttagtataagaaaaattggctacatagcgtccttg--------tttctagcaacataaattttgcctaa |
192 |
Q |
| |
|
|||| ||| ||| |||||||||||||||||||||||||||| ||| ||||||||||||| |||||| ||||||||||||| |||||||| ||| |
|
|
| T |
49107749 |
gatattgttgaaccaaaactcatagttcctcttagtataagcaaacttggctacatagcatccttgtttgcttctttctagcaacattaattttgcataa |
49107650 |
T |
|
| Q |
193 |
aatctatt |
200 |
Q |
| |
|
|||||||| |
|
|
| T |
49107649 |
aatctatt |
49107642 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 88 - 139
Target Start/End: Complemental strand, 27801106 - 27801054
Alignment:
| Q |
88 |
agacacaagagctgatact-gtagaagcaaaactcatagttcctcttagtata |
139 |
Q |
| |
|
|||||||||||||||| | |||||||||||||||| |||||||||||||||| |
|
|
| T |
27801106 |
agacacaagagctgatgttagtagaagcaaaactcaaagttcctcttagtata |
27801054 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University