View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5491_low_7 (Length: 321)
Name: NF5491_low_7
Description: NF5491
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5491_low_7 |
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Alignment Details
Target: chr2 (Bit Score: 224; Significance: 1e-123; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 20 - 247
Target Start/End: Original strand, 3895292 - 3895519
Alignment:
| Q |
20 |
agagattatgcttatgatgcaaaggaaagaaccaaggaaggagcgagttacatggctgataagacaaaagaaggagctgagaaaacggcagagaagacgg |
119 |
Q |
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| T |
3895292 |
agagattatgcttatgatgcaaaggaaagaaccaaggaaggagcgagttacatggctgataagacaaaagaaggagctgagaaaacggcggagaagacgg |
3895391 |
T |
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| Q |
120 |
gggaggttgctgggtcggcgacagaggctttgaagagtgctggggaaatggcgaagaagacggcccaaggagcgtgggagacagcgaaggatgcaacaca |
219 |
Q |
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| T |
3895392 |
gggaggttgctgggtcggcgacagaggctttgaagagtgctggggaaatggcgaagaagacggcccaaggagcgtgggagacagcgaaggatgcaacaca |
3895491 |
T |
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| Q |
220 |
aaagatcaaggagactgttgttggaaag |
247 |
Q |
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| T |
3895492 |
aaagatcaaggagactgttgttggaaag |
3895519 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 269 - 305
Target Start/End: Original strand, 3895538 - 3895574
Alignment:
| Q |
269 |
cgtggtagtggtggttctggtgtagtagtagatgatg |
305 |
Q |
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| T |
3895538 |
cgtggtagtggtggttctggtgtagtagtagatgatg |
3895574 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 20 - 57
Target Start/End: Original strand, 3895160 - 3895197
Alignment:
| Q |
20 |
agagattatgcttatgatgcaaaggaaagaaccaagga |
57 |
Q |
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| T |
3895160 |
agagattatgcttatgatgcaaaggagagaacaaagga |
3895197 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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